HsaINT0044332 @ hg19
Intron Retention
Gene
ENSG00000155016 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:20582]
Coordinates
chr4:108866126-108868693:+
Coord C1 exon
chr4:108866126-108866761
Coord A exon
chr4:108866762-108868531
Coord C2 exon
chr4:108868532-108868693
Length
1770 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ATTTTTCCCTTTTTACATAGAAA
3' ss Score
7.51
Exon sequences
Seq C1 exon
GGGTTGTGTTTGCACATTATGGTCCCGTCTGGAGACAACAAAGGAAGTTCTCTCATTCAACTCTTCGTCATTTTGGGTTGGGAAAACTTAGCTTGGAGCCCAAGATTATTGAGGAGTTCAAATATGTGAAAGCAGAAATGCAAAAGCACGGAGAAGACCCCTTCTGCCCTTTCTCCATCATCAGCAATGCCGTCTCTAACATCATTTGCTCCTTGTGCTTTGGCCAGCGCTTTGATTACACTAATAGTGAGTTCAAGAAAATGCTTGGTTTTATGTCACGAGGCCTAGAAATCTGTCTGAACAGTCAAGTCCTCCTGGTCAACATATGCCCTTGGCTTTATTACCTTCCCTTTGGACCATTTAAGGAATTAAGACAAATTGAAAAGGATATAACCAGTTTCCTTAAAAAAATCATCAAAGACCATCAAGAGTCTCTGGATAGAGAGAACCCTCAGGACTTCATAGACATGTACCTTCTCCACATGGAAGAGGAGAGGAAAAATAATAGTAACAGCAGTTTTGATGAAGAGTACTTATTTTATATCATTGGGGATCTCTTTATTGCTGGGACTGATACCACAACTAACTCTTTGCTCTGGTGCCTGCTGTATATGTCGCTGAACCCCGATGTACAAG
Seq A exon
GTAATTAATAGGTGTTTCCTTTGTTCATGGCAAAACCAGGTAATTTAAATGAGGATTAGCAACCTCAGTGATCTGGTGGCTTCTAACACTGAGCAATGTCTTCAGGCTGGCAAACAAATACTTGCAACTCATAGGGAGTTGGTAAGATGTTAACAGTGAAACCCAAGTTTCTAGACAGTAGGACTGAGGTCATAACTTGCTTACCCCTGCTTAAATCTCTACGCGTCTGATTCTATGTGAAATCTATGATCATGAAAGACCTTTAGAGAAGAACATTCTAGAGCTGAAGGGAATCATAATGCTGATCTGAACACATCTTGTTTTTTTGAAATTGGAGAACAGAGGCTCAGAGAAGTTGTGTGACTTTCACAAGGTCACACAGCTAGTTCTACCACCTAGTCCCAATAGATACTGAAAGTCTGTGGCAGTTCAGAGTAGAAGAATACAGGGAGGATGGTGTATTATTAGTTTCTGTTGCTGTTATAACAAATTACCACAAACCGAGTGGCTTAAAACAACACAAGTTTCTTAGAGTTCTATACATTCTAAGTCTGATATATGTCTCATTGGACTGAAAATCAGGATGTTGACAGGGCTGCATTCCTTTCTGGAGGGTCTAAAGAAGAATCAATTTCCATGCTGTTTCTGGCTTCCACAGCTCATGGTTTCCTTCTTCTGTCTTTGAAGGCAGCAGTGTTGCATCTCTGTAACCATTTGTTCATAGTCACATCTTCCTCTGACTCTGAACTCAACAGGGAAAGGTTATCTGACTTAAAAACCCATGTTCTTAGATTGGGCACACCCAGGTGACCAAGGATAATCTTCCAATCTCTGTGTCCTTAAGTTAATTACATCAGTTTAGTCCCTTTTGCCATGTAAGGTATTATGTTTACAGACTCCAGGGGATTAGGGTGTGTACATCTTGTATGGGCCCGTATTCTGCCTACTATAGATGTGATTATACCTACCTGTATTAGTTAATTATTGCTGGGTAGCAAACTACCCCCAAATTTGCTAGCTTTATAAAAACTGCCACCAGGCATTATCTCCCAGTTTCTGAGGGTCAGGAATCCAGGAATGACTTCCAGTTTAGGGTTTCTCATGAAGTTAGAGTTAAGATGTTGGCTGGGGCTGCAGACTTGAATGAGACCAAAGAATCCAGGTCCAGGGTGGCTATCCATATGACTATTGGCCAAGTTCCTTACCACTGTGACCCTTCCATAAGGCCACTTCACTTGGTGGCTTCCTTCCCCAAAAGTGAGCAACCTGAGAGAGGAGAGAGTGGCAAAGATGAGGAGCCACTCTGATCTCAGAAGTGACATGCCCTCACTTCACCCTTACTCTCTTGGTCACACAGACCAACTTGGTACAGAGTAGGAGGGGACTGCACAAGGATATAAACCACAAGAATAGGGAATATTGGGGGCCACCTTAGGCTATCACATGTTGTCACAGTCTACTTAGAGAGTCAATCCCATGTTCATAATGAGAGTATGACTTAGGATGCTCCTGAATCCAGAGTGTTTTCTCTTTGGCCCCTCTATCTGTTACACTATCCCACTTCTAAGTCACAGAGTGGCACAGGCACCCTGGGGCTAGCTGTCTCTACCTGAAATGTCTGACCAATGCTTCAACTTCACTGAGGCAGAATCAGGCCTGAACTGCCAACTGACCAGTTATGCATTAGTGGTGATGGAAAGTATGCAGAGGAGGGCACGTTCGACTCTGTCCCATGCTTATCTTCTGGTTTATTTTTCCCTTTTTACATAG
Seq C2 exon
AAAAGGTTCATGAAGAAATTGAAAGAGTCATTGGCGCCAACCGAGCTCCTTCCCTCACAGACAAGGCCCAGATGCCCTACACAGAAGCCACCATCATGGAAGTGCAGAGGCTAACTGTGGTGGTGCCGCTTGCCATTCCTCATATGACCTCAGAGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155016-CYP2U1:NM_183075:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(50.0=99.4)
A:
NA
C2:
PF0006717=p450=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTGGCTTTATTACCTTCCC
R:
TGGCGCCAATGACTCTTTCAA
Band lengths:
348-2118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)