BtaINT0046295 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015735 | CYP4F2
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075322]
Coordinates
chr7:8437666-8438900:-
Coord C1 exon
chr7:8438630-8438900
Coord A exon
chr7:8437733-8438629
Coord C2 exon
chr7:8437666-8437732
Length
897 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGATCTTTCTTTCTCTGCAGGAT
3' ss Score
11.33
Exon sequences
Seq C1 exon
GAAGCCCAGTGAATATATCGCCGCCATCTTGGAGCTTAGTGCGCTTGTGTCAAAAAGAAACCAACAACTCTTCCTGTATATGGACTTCCTGTACTATCTCACCTCAGACGGGCAGCGCTTCCGCAATGCCTGCCGCCTAGTGCACGACTTCACAGATGCCGTCATTCAGGAGCGGCGCCGCACTCTCCCCAAGGAGAATATTGATGACTTCCTCAAGGCCAAGGCGAAGACCAAGACTTTGGACTTCATTGATGTGCTTCTGCTGACCAAG
Seq A exon
GTGAGTTCCTCCGGGATGTGAGTTCGAGAGGTAGAAAGGACTTTGATCTGATCAAATAATTTGAATGGGATGCAGAGGGTCCTGGGGAGCCGTGGAAGGTGCTTGTAGAAGGGAGGGATGGGTCAGGGATGTTTTAGAGATGATCATTTGCAGTATAGCCTGTAGGGGACTGCTGAGTCTGAAACTGTGAAGGGCCTGTGATTTGATTCTAATGCAAACTGATAAGTCAGTCTACCACTGCGATAGGCTCTACATGTAGGTACAGAATCTATCTATCTATCTATATATATATATACAGAATCCTGGAGCAGAGCAGCACATTTATTTCTCATGGCCATAATAGTAGCCTGAGTAGAATTGTAGCTCTGGGTCCCCATTCCCAAATGCCTATTAGGGCACCATGATGCTTTTTTTTGTATATCAGCCATGCTTGGATCTCAGTACAAGTACCTCTAGATTTTGACATTTGGAACTTATACAGGGCAATTGATACATCAGCCCCTTTATCCCTATGGAGAGAGGGAGAGAGGGACTGGAAGAAAGATTATTCTGGAGCTTAAACAAATACTCTGGTGAGAAGGCAAATTCTAAAGGTTCTATAGTTTATAACCCAGGTTGTAACCCAGATTGCCAGAAACTTTTTGCAGAAATCCCCTGTCATGTATAAACATGAAAATATTTACAGATCACTGATTCCTCTCACCAGGGACAACACAGTAGAGAAAGATGTTAAGGAGGAGGCCTATGGAATATGGCCTCTAGTTACAGGCTGAGCAAAGGATTTCTAGGGCTTCAGGTTGGGATTGGGTTCTTATATGCAGTTTTACAGATTGTTTCACATTAGACTCAGGGGCCCTCAGAACTAATGTGATTCTGGGGATCTTTCTTTCTCTGCAG
Seq C2 exon
GATGAGGATGGGAAGGGATTGTCAGATGAAGATATCCGCGCTGAAGCTGACACCTTCATGTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015735:ENSBTAT00000020890:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGAATATATCGCCGCC
R:
CCTCAAACATGAAGGTGTCAGCT
Band lengths:
334-1231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]