GgaINT0039280 @ galGal3
Intron Retention
Gene
ENSGALG00000020687 | E1C120_CHICK
Description
NA
Coordinates
chr8:22596879-22597450:+
Coord C1 exon
chr8:22596879-22596978
Coord A exon
chr8:22596979-22597378
Coord C2 exon
chr8:22597379-22597450
Length
400 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCTGTCTCTGTGTTGCTAGGAT
3' ss Score
6.79
Exon sequences
Seq C1 exon
GATCCAGGAGCGAAAGGAGTCCCTTAAAGATGAACGGGAGTTTGAGAAGATCAAGAAGAAGAGGCATTTGGACTTCCTGGACATTTTACTCTGTGCTAAG
Seq A exon
GTGAGCAGTGAGGTGCATGGCTCATCACATCTGAGGAGGGCACATGCCATAGGGAGCAAAATTCAGTCCCTGTGGCAGTGCCACAAACTCACAGACATCCCCAGGGGATATTGTTTTACATTAGCTGCAGGCATCGTGCCCAGTCCTATCCAAATGAGGAAGAATGGGGATGTCCCAGTGTTCAACCACTGAGATGCTGGCAGTGTCTGGGATGACAACCTGGAAAGGGATTTCATAGTCTTAATATCATGGGGAAAAAGGGGTTTACAGGCAAAAAAAAAAAAAAAAGCATCCCTAAATTCAGTCTCTGCAGAGATTTATCCAAGGCCATCATCACCTCTCTTTGCAATGTTCCTTCCTGGGTTAAATGGGACCACTGAAGCTGTCTCTGTGTTGCTAG
Seq C2 exon
GATGAGACCGGAGCTGGCCTGTCTGATGAGGACCTGCGTGCTGAAGTGGACACGTTCATGTTTGAGGGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020687:ENSGALT00000017043:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(2.6=80.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]