MmuINT0045355 @ mm9
Intron Retention
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115301274-115308343:-
Coord C1 exon
chr4:115308237-115308343
Coord A exon
chr4:115301465-115308236
Coord C2 exon
chr4:115301274-115301464
Length
6772 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTCATCGTATCTTCTTTCAGGAT
3' ss Score
11.63
Exon sequences
Seq C1 exon
ATCATGTCATCAGGCAGCGGAAGGCAGCTCTGCAGGATGAGAAGGAGCAGAAAAAGCTTCAGGAGCGGAGACACCTGGACTTCCTCGACATTCTCCTGGGTGCCCGG
Seq A exon
GTGAGTGAACATAGTCCACCCTGTCTGACAGCTGCTGCCAGGGAAGTCTTTAGGCTCTCTTCCTGAAGCAGTGTCCCTGCCCAGCAAGTATAATGTATTACCCAAGGCACAGATCAACAACGGTAAAATGTGCAGCATGTGTGTGGCTGGGCTGTGACATTAGGGAACTGGCAGTCTGGATCACATGGAAGCATCTTACAGAGTTTTCTAAGGTCCCTAACAATCTTGGCATTGCAGAACCTCAGAGGCAAGACTTAACAATTCCCTCTTTTCCTTCCTTCCTTCCTTCCTTCCTTACTTCCTTCCTTCCTTCCTTCCTTTTTTCCTTCCTTCCTCCCTCCCTCCCTCCCTTCCTTCCTTTTTCCCTTCCTTTTTCTTTCCCTTCCACCCTCTCTCCTTCCTCCTATCTTTTCTTTCTCCCCAGTTCCTCTCTCTTTTATGTCCTCCCTCACCTCCTTCTTTGATTCCACAAAACTTTGTGCCGAACCCAAGTTAATTCCTGTGCAGAGTTAAGAAAGACCTGGTATGGCCTCAGCATCGGTAGGAGCCATCTTGGTTCCATGAGTCCGCCAAAAGTAGTCTGCACAGGTGAGAGTGTGCACTCCCAATGCTAACAGCTTCTGGGACAGGCGGGAGCCACAGAGCTTTTGAGGCAGCCACTTTTCAGGCTCCAGACATCTGGGCACCACACCTGGGCACCTTCCCGGCCAGAGGATATGTGTCCGCCTGGCCTGGGAGGGCTTTGCCTCAGCATCAGCAGGAGCCATCTTGGTTCCGGGACTCTGATGAAAGTAGTCTGCACAAGTGAGAGTGTGGACTATAGAAGCAAACAGCTTCTGTGACAGGCCAAAGCAACACAGCTTCTGGGACAGGTTCTGTTTTGGGCCTAATCTTGGGCTAGGAGGGAGGTCCGAAAGCAGATATCTGTGCACTTTCCCTGTAAGAGGAGAGCTTGCCTGCAGAGAGTGCTCTGACCACTGAAACTCAGAGGAGAGAGAAAGTCTCCCAGGTCTGCTCATAGAGGCTAACAGAATCACCAGAGGAACAATCACTAACCAGAGACAACTATAACAATTAACTTCAGAGATTACCAGATGGCAAAAGGTAAACGTAAGAATCTTACTAATAGAAACCAAGACCACTCACAATCATCAGAACCCAGCACTCCCACTTCACCCAGTCCAGGGCACCCCAACACACCTGGAAAGCTAGACCTGGATTTAAAAGCATATCTCATGATGATGGTAGAGGACATCAAGAAGGACTTTAATAACTCACTTAAAGAAATACAGGAGAACACAGTTAACAGGTAGAGGACATTAAAGAGGAAACACAAAAATTCCTTAAAGAATTGCAGGAAAACACAACAAAACAGGTGATGGAATTGAATAAAACCATCCAAGACCTAAAAAGGAAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACACTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCAAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATTGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACAGATAATAGGAGTAGATGAGAATGAAAATTTTCAGCTCAAATGTCCAGCAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCATACCTAAAGAAAGAGATGCCAATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAGAGAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGATGGATGTAATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTTTCAATTACCTTAGATGGAGAAACGAAAGTATTCCATGACAGAACCAAATTCACACATTATCTTTCCACGAATCACGCCCTTCAAAGGATAATAGCAGAAAAAAACCAATTCAAGGAGGGAACCATGTCCTAGAAAAAGCAAGAAAGTAATTCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAATAGGAAGCAACAATTACTTTTCCTTACTATCTCTTAATATGAATGGACTCAACTCCCCAATAAAAAGACATAGACTTACAGACTGGCTACACAAACGGACCCAACATTTTGGTGCTTACAGGAAACTCATCTTAGGGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAAAAACAAGCTTGAGTAGCCATTCTAATATCTAATAAAATCGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCATATGCATCAAAGGTAAAATCTTCCAAAAGGAACTCTCAATTATGAATATCTATGCTCCAAATACAAGGGCAGCCATATTCATTAAAGAAACTTTAATAAAGCTCAAAGCACACATTGCACCTGACACAATAATAGTGGGGGTCTTCAGCTCACCACTTTGACCAATGGACAGATCATGGAAACAGAAACTAAACAGCGACACATTGAAACTAACAGAAGTTATGAAAGAAATGGATCTAACAGATATCCACAGAACATTTTATTCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATTGGTCACAAAAAAACCTCAACATATACAAAAATATTAAAATTGTCCCATGCACCCTGTCAAATCACATGGACTAATGCTGATCTTCAATTACAAAATAAATAATAGAAAGCCGACCTTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAATTAAGGACTTTTTGGAGTTTAATGAAAATGAAGCCAAAACATACCCAAACTTATGGGACACAATGAAAGCATTTCTAAGAGGAAAACTTATATCTCTGGGTGCCCCCAAAAAGAAACAAGAGAGAGCACACATTAGCAGCTTGACAACACACTTAAAAGCTCAGGAACAAAAGGAAGCAAATTCACCTAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAAATATTCAAAGAATCAACCAAAGGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGGCACAGGGAAAGCATCCTAATGAACAAAAACAGAAATGAAAAGGGAGACATAGCAACAGATCCTGAAGAAATCCACAACACCATTAGATTCTTCTACAAAAGCTATTCTCAACAAAACTGGAGAACCTGGATGAAATGGACAAGATTCTACACAGATACCAGCTACTAAAGTTAAATCAAGATCTGGCTAATGATCTAAACAGTCCTGTATCCCCTAAAGAAACAGAAGCAGTCATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCCAAACCACAAAAAGACCCAACAAAGATAGAGAACTCCAGACCAATTTCCCTTATGAATATCGATGCAAAAATACTCAATAAAGTTCTCACAAACCGAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATATATGAAAATCCTTCAATGTAATCCAGTATATAAACAAACTCAAAGACAAAAACCAAATGATCATCTCGTTAGATGCAGAGAAAGCATTTGACAAAATCCAACACCCATTCATGATAAAAATCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAACCATGATAAAAGCAATCTACAGCAAATAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTATCTCTTCAACATAGTACTTGAAGTCCTAGCCAGAGCAATTAGATAACAAAAGGAGATCAAGGGAATACAATTTGGAAATGATGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATGAGACCCTAAAAATTCTCCCAGAGAACTCCTAAACCTGATAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAACATAAAATACCTTGGCGTGATTCTAACTAAGGAAGTAAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAATATCTCAGAAGATAGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCTAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAACATTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAGAAGAATGTGAATTGATCCATTCCTATCTCCTTGTACTAAAGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAATCAGAGACACTGAAACTTACAGAGGAGAAAGTAGGAAAAAGCCTTGGAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAACGACACTGTAAATAAGAGAAAAAGACCACCAACAGATCGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGTCGCTAGAAAACCAAATAACCCCATTAAAAAATGCGGCTCATAACTGACCAAAGAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAATAATGTTCAACATCCTTAATCATAAGGGAAATCCAAATCAAAATATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGTCAAGGTTGTGGAGAAAGAGGAACACTCCTTCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATATCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACTCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATCTACCCAACGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTTTTAGGCAAATGGATGGACCTGGAGGATATCATCCTGAGTGAGGTAACACAATCACAAAGGAACTCACACAATCTGTGCTCAATGATAAGTGCATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAATGCATGAAACTGAAGAAGAATGAAGACCAAAGTGTGGACACTGTGGCCCTTATTAAATTGGGATCAAAACACCCATGGAAGGAGTTGCAGAGACAATGTTTGGAGCTGTGATGAAAGGATGGACCATCTAGAGACTTCCACATCCGGGGATCCATCTCATAATCAGCTTCCTAACGCTGACACCATTGTATACACTAGCAAGATTTTGCTGAAAGGTCCCAGATAGAGCTCTCTCTTGTGAGACTATGCCGGGGTCTAGCAAACACAGAAGTGGATGCTCACCATCAGCTATTGGATGGATCACAGTGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCTGGAGCTCGTGTCTCTAGCTGCATATGAATCAGAAGATGGCCTAGTCATTCATCAGTGGAAAGAGAGGCCCATTGTTCGTGTAAACTTTGTATGTCTCAGTGCAGGGGAATGACAGGGCCAAGAAGTAGGAGTGGTTGGGTTGGGGAGTGGGTGGGGGAGCGTGTGGGGGACTTTTGGGATAGCTTTCTTATCCTTCCTCAGATTTGTATCCAACAGCTACTGTTGGGCATTCTTCTCATCCCTAACTCTCATCGTATCTTCTTTCAG
Seq C2 exon
GATGAAAGTGGGATCAAGTTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATTCATGTTCGAAGGCCACGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTATCCTATGCACCAGCAGCGATGTAGGGAGGAGGTCCGTGAGATCCTAGGGGACCGGGACTCCTTCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713-Cyp4b1:NM_007823:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.7=100)
A:
NA
C2:
PF0006717=p450=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: