GgaINT1002651 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20777189-20777884:+
Coord C1 exon
chr8:20777189-20777295
Coord A exon
chr8:20777296-20777693
Coord C2 exon
chr8:20777694-20777884
Length
398 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCTGTCTCTGTGTTGCTAGGAT
3' ss Score
6.79
Exon sequences
Seq C1 exon
ACAAAGTGATCCAGGAGCGAAAGGAGTCCCTTAAAGATGAACGGGAGTTTGAGAAGATCAAGAAGAAGAGGCATTTGGACTTCCTGGACATTCTACTCTGTGCTAAG
Seq A exon
GTGAGCAGTGAGGTGCATGGCTCATCACATCTGAGGAGGGCACATGCCATAGGGAGCAAAATTCAGTCCCTGTGGCAGTGCCACAAACTCACAGACATCCCCAGGGGATATTGTTTTACATTAGCTGCAGGCATCGTGCCCAGTCCTATCCAAATGAGGAAGAATGGGGATGTCCCAGTGTTCAACCACTGAGATGCTGGCAGTGTCTGGGATGACAACCTGGAAAGGGATTTCATAGTCTTAATATCATGGGGAAAAAGGGGTTTACAGGACAAAAAAAAAAAAAGCATCCCTAAATTCAGTCTCTGCAGAGATTTATCCAAGGCCATCATCACCTCTCTTTGCAATGTTCCTTCCTGGGTTAAATGGGACCACTGAAGCTGTCTCTGTGTTGCTAG
Seq C2 exon
GATGAGACCGGAGCTGGCCTGTCTGATGAGGACCTGCGTGCTGAAGTGGACACGTTCATGTTTGAGGGGCATGACACCACAGCCAGTGGGCTCTCATGGGTCCTGTACTGCCTGGCGTCACACCCCGAGCACCAGGCACGGTGCAGGGAGGAGATCAAGGACATCCTGGGCAGTCGGGACACCATTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
NA
C2:
PF0006717=p450=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCCAGGAGCGAAAGGA
R:
CACTGAATGGTGTCCCGACTG
Band lengths:
294-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]