DreINT0054423 @ danRer10
Intron Retention
Gene
ENSDARG00000004964 | cyp4t8
Description
cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
Coordinates
chr16:4800826-4801220:-
Coord C1 exon
chr16:4801114-4801220
Coord A exon
chr16:4801017-4801113
Coord C2 exon
chr16:4800826-4801016
Length
97 bp
Sequences
Splice sites
5' ss Seq
CGAGTATGA
5' ss Score
3.08
3' ss Seq
TTTTTGTGTGCCGCCCACAGGAC
3' ss Score
10.74
Exon sequences
Seq C1 exon
CGGAAGTTATCAGAAAGAGGAAAGAAGTCTTGAAGATGGAGGAGGAGCAGGGCATTGTTAAAAACAGACGATATTTAGACTTTCTGGATATTCTTCTGTCTGCTCGA
Seq A exon
GTATGAGATTCTCAAACACTCACACAAAATAAACATCTGACATTTTGTTACGTAATGCATGCGATGGCATGGACTGATTTTTGTGTGCCGCCCACAG
Seq C2 exon
GACGAGCATCAGCAGGGTTTGTCAGACGAGGACATCAGAGCTGAAGTGGACACGTTCATGTTTGAGGGCCACGACACCACGGCTAGTGGAATATCCTGGATCTTCTATAATCTGGCTTGTAATCCCGAGCACCAGGAGAAATGCAGGCAGGAGATCCAGCAAGCTCTGGATGGAAAAGCCACGCTGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004964:ENSDART00000131949:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
NA
C2:
PF0006717=p450=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGGAGGAGGAGCAGG
R:
TCCAGGATATTCCACTAGCCGT
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]