HsaINT0044552 @ hg19
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:20244]
Coordinates
chr1:47504332-47505204:+
Coord C1 exon
chr1:47504332-47504438
Coord A exon
chr1:47504439-47505013
Coord C2 exon
chr1:47505014-47505204
Length
575 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATTTGTATTGTACTTTCTAGGAT
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATACAATAATCCAGGAAAGAAAGAAATCCCTCCAGGCTGGGGTAAAGCAGGATAACACTCCGAAGAGGAAGTACCAGGATTTTCTGGATATTGTCCTTTCTGCCAAG
Seq A exon
GTAAATCTTCTAAATTTCTAAGCCTGCTCAAGTGACCAGTTAATTATGTAAGTAGGTGGGTAAGTGGGAATGGGATGGGGAGACAAGAATAAAACCGATTGACTAAATTTAACTGTACTTTGAATTGATGAGCAGCTTCATGCAATTTGAGACAAAGAGAGAATTCTGCAACTGTGTCGCTAGAGGAGGGTTAGTAAAGACTAAACGAACGATTTGACAAGATTTGAGGATTGTCATATGGATACATGGATTTTAGGGCATCATGAAAAAATGGTCACATGGATAAACGTAAAAATTATGATGATAAGGTCCTGGGAAATCTGGGAGTTTGAAGAGAATTTCTAGGGCCTGTTGATTGAGGGCCCTTTGTGCAAGGCCTGCTTTTCTTATCTAACCTTGGTTCTCCTTTATGCTTTGGGCAGAATATGGTTTATACCACATATTTGTTGAACTGAATTAAAATTTAAACCCCTATTTAAAGCTCTGATTTTTCCCCTCAAATCATTATTGTGGTTGTATCTCCAAACATTTATAAACTGGCATTTTATTTAAAATATTTGTATTGTACTTTCTAG
Seq C2 exon
GATGAAAGTGGTAGCAGCTTCTCAGATATTGATGTACACTCTGAAGTGAGCACATTCCTGTTGGCAGGACATGACACCTTGGCAGCAAGCATCTCCTGGATCCTTTACTGCCTGGCTCTGAACCCTGAGCATCAAGAGAGATGCCGGGAGGAGGTCAGGGGCATCCTGGGGGATGGGTCTTCTATCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-CYP4X1:NM_178033:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
NA
C2:
PF0006717=p450=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAATCCAGGAAAGAAAGAAATCCC
R:
CAAGTGATAGAAGACCCATCCCC
Band lengths:
294-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)