BtaINT0046336 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99674763-99675702:-
Coord C1 exon
chr3:99675596-99675702
Coord A exon
chr3:99674951-99675595
Coord C2 exon
chr3:99674763-99674950
Length
645 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ATCTCTACTATTCTTTCTAGGCT
3' ss Score
7.75
Exon sequences
Seq C1 exon
ACAAGATAGTCAAGAATAGAAGGAATTCCCTCAAGGATGAGAATAAGCAGACTAACACTCAGAAGAGGAAATACCGGGACTTCCTGGATATTGTCCTTTCTGCTCAG
Seq A exon
GTAAGTCTTTCAAATTCTGAGCCTACTCATGTATCTAATTAATTGCCTGGGTAGTTAGAAGAGAGGGAGGAGGGAAGACAAGAAACAAAATCTTTCAAATTCTGAGCCTGCTTATGTATCTAGTTAATTGTGTGGGTAGTTAGATGAGTGGGAGGAGGGAAGACAAAAGCAAAACTGATCAACTAAATTTAACAGTACTTTTGAATTGATGGTTGGTGCTGCAGTTTGAGATTAAAAACTGAATTCTACAATTCTGTCACTAGAGGGAGTCAGATAAGACTAAATTTTTTACAAATTCAGCAGGATTTGGTGATTATCATAAAGATACATGGTAGTTCAGGGAAACACGGGAAAGTGAATCAGATTGAGCTGATAAACCAATGAGGAAGAGATGCTGAAAAGTCTGGATAAATCTGACAAAATGATTGCAGGAAGTTATTGCAGGGGCCTGCTTTTCTTATCTGTCTTTGGTTCTCCTTTATGCCCTGGGCAAAGCATGACTCAAACTATATATTTGTTAAACTGCATAAAAATGAAAACTCTTATTTGATAGCTAGTTTTTCCCCCTAAAACCATTGTTTTGACTGGGGCTTCAAACATCTGTAAACTGACACTGCATAAAAGTATCTCTACTATTCTTTCTAG
Seq C2 exon
GCTGAAAATGATAGCTTCACAGATGCAGACCTGTGGTCCGAGGTGAACACATTCATGGTGGCAGGGCATGACTCTGTATCAGCAGGCATTTCCTGGCTCCTCTACCACCTAGCTCTGTACCCTGAGCATCAGGAGAAATGCCGGGAGGAGATCAGAGCCATCCTGGGGGATGGGTCTTCCATTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647:ENSBTAT00000020783:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.0=100)
A:
NA
C2:
PF0006717=p450=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGTCAAGAATAGAAGGAATTCCC
R:
TGGAAGACCCATCCCCCAG
Band lengths:
284-929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]