HsaINT0044449 @ hg38
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46814209-46815264:+
Coord C1 exon
chr1:46814209-46814315
Coord A exon
chr1:46814316-46815073
Coord C2 exon
chr1:46815074-46815264
Length
758 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTATGCCTTCCCTAACCCAGGAT
3' ss Score
6.98
Exon sequences
Seq C1 exon
ACCAGGTCATCAGGGAGCGGAAGGCAGCCCTGCAGGATGAGAAGGTGCGGAAGAAGATCCAGAACCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGCCCGG
Seq A exon
GTGAGTACATTGTTGCCCACCCCTACCTGAGGACTGGTCCCAGAGAGGTCTTCAACCATCCTCCCAGGACAGCAGAAGGAGCTCTTAAGCATTTCCCCCTTTCCTCAGCAAATATAACCTGTTCCTCGTCCCATGAAACATATTAGCAGGGGTTCAGAGGTGGGCAGGTGTAGGGTGTGTGTGCCTGAGCTGTGGAGTTGGGAGCCTAGGTCACGTGGTAGTGGCTGGACGACATTTCTAGACTTCTAAGATCCCCCAAAATGTTGGCCTTGTAGAATCCTAGAATCTTAGACTTCATTCATTCATTCATTCATTCAGTAAGTTCTTTATTCATCAATTCTAGAAACTCACTGAGTTCTGACTCTGGGTCATTTCCGTGCTAGGATGCAGAGATGGGAAAGACCTGGCCCTTCCTTCCAGATGCTTACAGTCCAGCAGGGGAGACAGTAGGTAGATGTTGACCAAAATGTCTTCCTCTGGCAGGTGGTATTCTATGTGCCCAGTGAGCAGAACAGTCAGGGCTGGACAAGGTCACAAGTCATTTGGCCAGAGCATTTAGGGAGGGCTTTGTGGAGGAGGAGGCATCCAGGCTGAGCTTTGAAGGAATATAGGAATCTGGGGGAAGGTCCTAATCCACCCTCTGAAAAGGAGCTTTCACTCCCTCCCAGAGACCTTCATTTGACAACCACCATTATGAGTTCTTCTTGTTACCCACCTCCAATACCTCAAGCTGTCCTATTATGCCTTCCCTAACCCAG
Seq C2 exon
GATGAAGATGACATCAAACTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACCAGTGGTATCTCCTGGTTTCTCTACTGCATGGCCCTGTACCCTGAGCACCAGCATCGTTGTAGAGAGGAGGTCCGCGAGATCCTAGGGGACCAGGACTTCTTCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973:ENST00000271153:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.0=100)
A:
NA
C2:
PF0006717=p450=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGTCATCAGGGAGCG
R:
GGAAGAAGTCCTGGTCCCCTA
Band lengths:
294-1052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development