HsaINT0044449 @ hg19
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450, family 4, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:2644]
Coordinates
chr1:47279881-47280936:+
Coord C1 exon
chr1:47279881-47279987
Coord A exon
chr1:47279988-47280745
Coord C2 exon
chr1:47280746-47280936
Length
758 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTATGCCTTCCCTAACCCAGGAT
3' ss Score
6.98
Exon sequences
Seq C1 exon
ACCAGGTCATCAGGGAGCGGAAGGCAGCCCTGCAGGATGAGAAGGTGCGGAAGAAGATCCAGAACCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGCCCGG
Seq A exon
GTGAGTACATTGTTGCCCACCCCTACCTGAGGACTGGTCCCAGAGAGGTCTTCAACCATCCTCCCAGGACAGCAGAAGGAGCTCTTAAGCATTTCCCCCTTTCCTCAGCAAATATAACCTGTTCCTCGTCCCATGAAACATATTAGCAGGGGTTCAGAGGTGGGCAGGTGTAGGGTGTGTGTGCCTGAGCTGTGGAGTTGGGAGCCTAGGTCACGTGGTAGTGGCTGGACGACATTTCTAGACTTCTAAGATCCCCCAAAATGTTGGCCTTGTAGAATCCTAGAATCTTAGACTTCATTCATTCATTCATTCATTCAGTAAGTTCTTTATTCATCAATTCTAGAAACTCACTGAGTTCTGACTCTGGGTCATTTCCGTGCTAGGATGCAGAGATGGGAAAGACCTGGCCCTTCCTTCCAGATGCTTACAGTCCAGCAGGGGAGACAGTAGGTAGATGTTGACCAAAATGTCTTCCTCTGGCAGGTGGTATTCTATGTGCCCAGTGAGCAGAACAGTCAGGGCTGGACAAGGTCACAAGTCATTTGGCCAGAGCATTTAGGGAGGGCTTTGTGGAGGAGGAGGCATCCAGGCTGAGCTTTGAAGGAATATAGGAATCTGGGGGAAGGTCCTAATCCACCCTCTGAAAAGGAGCTTTCACTCCCTCCCAGAGACCTTCATTTGACAACCACCATTATGAGTTCTTCTTGTTACCCACCTCCAATACCTCAAGCTGTCCTATTATGCCTTCCCTAACCCAG
Seq C2 exon
GATGAAGATGACATCAAACTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACCAGTGGTATCTCCTGGTTTCTCTACTGCATGGCCCTGTACCCTGAGCACCAGCATCGTTGTAGAGAGGAGGTCCGCGAGATCCTAGGGGACCAGGACTTCTTCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973-CYP4B1:NM_001099772:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGTCATCAGGGAGCG
R:
GGAAGAAGTCCTGGTCCCCTA
Band lengths:
294-1052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)