RnoINT0044541 @ rn6
Intron Retention
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134513646-134514764:-
Coord C1 exon
chr5:134514658-134514764
Coord A exon
chr5:134513837-134514657
Coord C2 exon
chr5:134513646-134513836
Length
821 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTCATTGTGCCTTCTCTCAGGAT
3' ss Score
9.86
Exon sequences
Seq C1 exon
ATGAGGTCATCAGGCAGCGGAAGGCAGCACTGCAGGATGAGAAAGAGCGGAAAAAGATTCAGCAGCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGTCCGG
Seq A exon
GTGAGTGCACATAGCCCACCCTGTCTGACAGCTGGTCCCAGGGAGGTCTTTAGGCTCTCTTCCTGAAGCAGGCTCCTTGCCCAGCAAGTATAATGTATTGCTTACCCATGGCGCAAATCAACAAAGGTAAAATGTGCAGCATGTGTGTGACTGGGCTGTGACATTAGGGAACTGGCAGCCTGGGCCGCATGGTAGCAGCTTGAAGACATTTCTAGACTTCCAAGATCCCTAAAAATCATGGCGTTGCAAAACCTGGGAGTTTAGATTTTATTCTCTTCCCTCCTTTCCTCCCTCTCTCCCCTTTCCTTCCTTCCTTTCCTCCTTCCTCCCTCCTTCCCTTCCTCCCTTCCTTCCCTCCTCCCTTTCTCCCTCCCTCTTTCCCTTCCACCTCTGTCTCCCTCCTCCTATCTTTTCCTTTCTCCCCATTTCATCCCTCACTTCCTTCTTTGATTCCGTAACACTTAGTGTCTCCCTGAGTCAATTCCTGTGCTAGGTTGCTGAGATAAGAAAGAGCTGGTATTGTCATCCATTTGTACACAGCATGCCTTTGGGAAGGCAGTAGGTAAATGTTGACAATGATGTTTTCCCCTGCCAGTTGGAAGCAATGTCCCTAATGAACTTACCAAGATTGAATAAAGTCGCCAGTTATGTGTCCAGAGGGTTTAGGAGGGTTTCATGAACTAGAAGCATCGAGGCTGGGTTTGGAAGAAACAGAAGAATCTGGACACTCCTCGTCTACCAAGAATCTGACAGCTACTGCTGGGCATTCTTCTCATCCCTAACTCAGAGGCCACCATCTGTTTCATTGTGCCTTCTCTCAG
Seq C2 exon
GATGAAAGTGGGATCAAGCTGTCAGATGCAGAGCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTACCCTGAGCACCAGCAGCTATGTAGGGAGGAGGTCCGTGGGATCCTAGGAGACCAAGACTCCTTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078:ENSRNOT00000013321:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
NA
C2:
PF0006717=p450=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATCAGGCAGCGGAAG
R:
CATTGGAAGGAGTCTTGGTCTC
Band lengths:
294-1115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]