GgaINT0035775 @ galGal3
Intron Retention
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22609833-22610882:+
Coord C1 exon
chr8:22609833-22609939
Coord A exon
chr8:22609940-22610691
Coord C2 exon
chr8:22610692-22610882
Length
752 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TATATTCTCCTCTTTGCTAGGAT
3' ss Score
8.02
Exon sequences
Seq C1 exon
ATAAAGTAATACAAGAAAGAAAGATATTGCTCTCCAATGACAAGGAGCTAGACAAGATCCGGAAGAAGAGACACCTGGATTTTCTGGACATTCTTCTTTGTACCAAG
Seq A exon
GTGAAGGTTTGACATAATCCCATCAGATACTATAGATTGTACTTGCATGGCACAAGGGTTGAACGAGCATCCCTATTTCCTAGCCTGGGGAAAGGTGGACAGAAAGGAAAGGTAATAAAGATGTGTGGGATGCAGTGAGCAAACATAAATAGCTCAGAATTTCACCTTCCTTGTTCACTTCCATCAAGTCCATTCCTATTTTGAAAGGTGTGGGCTATCAGAAACCTGAAGAAAGACCTTTGGGGAGGATACAAGGAGGCCGCCTTGGCTGCAGTCCTCTCAGGAGGTTTTGCTCCCTGCCTTCTGTAGTTTTACCTTCACAGATGCCTTCAGAAACTCTGGACAGAAGCTGCCATTTGGTGTTGAGGATGAAGACACTGTGCTCACTGCTCTTTGTGGGGCTTCTGCTTTCTTTTGTGCCACCATCTTAAACAAAAGCCAAAAGAAACCAAACTACTGAAAAACGTAACAGAAGAACAAATGGGTTGTCCTGCAATAGGCTGTCCTGCTGAAGGGCCAGGAGCTGGTATTGCAATAAAACCCAGCTCTGTTGACTGCAGCGTCAGCAACCAACGGCTCTGTTCTCACGTATACTGGATACAGTTTCTACTGGCTTAGCTCTTGGTATACAAGGAGATACAAAAGAAGCCAAACCAGGTCCTTCTTTCTCAGCATCTAGGGCTGTTTTTACACGCAACAGAGCTAGCCCAGTTAATGAGAGCATGAGAATGATATATTCTCCTCTTTGCTAG
Seq C2 exon
GATGAGAATGGAGTTGGCCTGTCTGATGAGGACCTGCGTGCTGAGGTGGACACATTCATGTTTGAGGGGCACGACACCACAGCCAGCGGGATCTCATGGCTCCTGTACTGCATGGCATTGCACCCCAAGCACCAGGCACTGTGCAGGGAGGAGATCCAGGGGATCATGGGGAACCGGGATACCATTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
NA
C2:
PF0006717=p450=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAAGAAAGATATTGCTCTCCA
R:
CTCAATGGTATCCCGGTTCCC
Band lengths:
286-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]