MmuINT0045276 @ mm9
Intron Retention
Gene
ENSMUSG00000066071 | Cyp4a12a
Description
cytochrome P450, family 4, subfamily a, polypeptide 12a [Source:MGI Symbol;Acc:MGI:88612]
Coordinates
chr4:114999819-115000210:+
Coord C1 exon
chr4:114999819-114999925
Coord A exon
chr4:114999926-115000019
Coord C2 exon
chr4:115000020-115000210
Length
94 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCATCTGTGGTCTTATCCAGATG
3' ss Score
8.93
Exon sequences
Seq C1 exon
ACCAAGTGATCAAATCAAGGAGGATTCAACTTCAGGATGAGGAAGAGTTGGAAAAGCTTAAGAAGAAAAGGCGATTGGATTTCCTGGACATCCTCCTATTTGCCAGA
Seq A exon
GTGAGTGTATGAAACCAGATGAGAGACTTGCGACTTGACCTAGAACCAGAGCATAAGAAACAAACATTACTTTCTCATCTGTGGTCTTATCCAG
Seq C2 exon
ATGGAAAATGGAAAAAGCTTATCTGATAAGGACCTTCGTGCTGAAGTGGATACTTTCATGTTCGAGGGCCATGACACCACAGCTAGTGGTATCTCCTGGATCTTCTATGCTTTGGCCACAAATCCTGAACATCAACAGAGATGCAGGAAGGAGATCCAAAGTCTCCTAGGAGATGGGACTTCTATCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066071-Cyp4a12a:NM_177406:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
NA
C2:
PF0006717=p450=PU(39.9=98.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGATTGGATTTCCTGGAC
R:
TCAGGATTTGTGGCCAAAGCA
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: