BtaINT0046298 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8629858-8631383:-
Coord C1 exon
chr7:8631319-8631383
Coord A exon
chr7:8629941-8631318
Coord C2 exon
chr7:8629858-8629940
Length
1378 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACAATCTACTTCTGCCTAGGTG
3' ss Score
6.54
Exon sequences
Seq C1 exon
GAATCATCTGCCTGGTTAGCATCTATGGGACCCACTATAACCCTGCAGTGTGGCCTGACTCCAAG
Seq A exon
GTGAGCTCCTGCCCCAACCCTCCCTTCTCTCGGCTTCTTCCTCCTAAGACCTTGGTCAGCAAGGCCACCCCTCTCCTCCTCCCCAGGGAGCCAGATGGTAGGGCTGAATGCAGGGCTTGAGGACTTCTTCTCACCGTCACCCCCATTCATTCACCCATTCACTGTTAATTCACTATATCTACAAATCTTTTTTTTTTTTTTTTAACTTTTTGACTGCACTGTGTGGCATGTGGGCTCTTAGTTTCCTGATCAGGGATTGAACCCATGCTCCCTGCAGTGGAATTGCAGGGTCCTAACCACTGGACTGCCAGGGTTCAGTTCAGTTCAGTCACTCAGTTGTGTCTGACTCTTTGTGACCCCATGGGCTGCAGCACACCAGGCTTCCCTGTCCATCACCAACTCCTGGAGCTTACTCAAACTCATGTCTATCCAGTCGGTGATGCCATCCAACCGTCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCTTCAATCTATCTCAGCATCGGAGTCTTTTCTTGCTCCTCCACAGCTCTTTGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGATTGATTTCCTTTAGGATTGATTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTTTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCAGTGCTTAGCTTTCTTTATGGTCCAAGTCTCACTCATCCATACATGACTACTGGAAAAACCATAGCTTTGACTAGATGGGCCTTTGTTGGTGAAGTAATATCTCTGCTTTTTAATAGTCTAGGTTGGTCATAGCTTTTCTTCCAAGCAGCAAGCACCTTTTAATCTCAAGGCTGCAGTCACCATCTGCAGTAATTTTGGAGTCCAAGACTGCCAGGGAAACCCCAACACATCTTTCTTGAGCAACTACTGTGTATGGGACACTGAGGGCCCTCTGGGGCACTCTGTCTTTGCTCTCACAGAGCAGACAGTGAAGTGAGGAGGAAGAAAATAAGCAAATAAATAAGATCATTTTGAACTGTGATAAGTACACAAAGGAAACAAAAGCTGGCCTGGGTTGGGGGAGAGCAGTTTAGCTCACACAGTGAGGAAGGTCCTTACTAGAGAAGAGAGGGGTGAGCTAAAACTGAAAATGTTCACACTTTAAAAGTGTGAGGAGCAGGGAAAACTGTGTCCCATGTGGAGGCAACTGCCAGTGCAAAGGTCCTGTGGTAGAATGGAAAAGAGGCAGGTGTGGCTGGACCTCTTGGCCCAGCTGGTCTGGCCCCCAGAGGCTGAGGGAGGGAACCACGCTGGGACGGCCAGAATCAGGCCCCCTTAAACTCACCCACAATCTACTTCTGCCTAG
Seq C2 exon
GTGTACAACCCCTATCGCTTTGATCCGGACAACCCACAGCAGCGCTCCCCATTGGCTTACGTGCCCTTTTCTGCAGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933:ENSBTAT00000066325:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]