HsaINT0044491 @ hg19
Intron Retention
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:26820]
Coordinates
chr19:15659949-15661567:+
Coord C1 exon
chr19:15659949-15660013
Coord A exon
chr19:15660014-15661484
Coord C2 exon
chr19:15661485-15661567
Length
1471 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCCAGGCTGTTCCTCCCTAGGTG
3' ss Score
9.29
Exon sequences
Seq C1 exon
GAATCATCTGCTTGGTCAGCATCTATGGAACCCACCACAACCCCACAGTGTGGCCTGACTCCAAG
Seq A exon
GTGAGTGCCTGCCCCACTCCTCCCTGCCCTCAGGTCCTCCCCTCCCCTGCGCCCCAGGGAGCCAGCGAGCAGGGCTGGTTGCAGGGCCTGAGTGCGCACACCCCTCCCCACTCCGCATTTAGCCATTTATTCACCCACTGATTGTTAATTCATTAGGGCAGAAAATATTTATTGAGCACCTACTGTGTGCCAGAGTGTGTGCTGGGCTCTGAAAATAGAGGATGATACTGTCTTTGCCTTTACAGGGCTCACAGTGAAGTTTTGGGGAAGACAATAAGCAAATAAATAAGATTTTGGGTATTGATACATGCACAAAAGAAAGAAAAACTGGGCCAGTTCCGGTTTACAGGTGCAGTGGCTCACACTTGTAATCCCAGCACTTTGAGAGGCTAAGGTGGGAGAATCGCTTGGGCCCAGGAGTTTGAGACCAGCCTGGGCAACACAGCGAGACCCCCCATCTCTACCAAAAAGGAAAAAGTTGGCCCAATGTGGTGGCTTGTGTCTGTAATCCCAGTGCTTTGGGAGACCAAGATGGGAAGATTGTTTGAGGCCAGAAGTTCCAGCTCAGCCCAGCCTGGGCAACACAGTGAGACCCCATTTCTAAAAAAAAAAAAAGTTAGCCAGCCATGGTGATGCACATCTGCAGTGCCAGCCACTCGGGAGGCTGAGGCAGGAGGATCGCTTGGGCCCAGCAGTTTGAGGCTGCAATGAGCTATGGTTATTTATTTATTTATTTATTTGAGACTGGGTCTTGCTCTGTTGCCCAAGCTGGAGCGTGTGCAGTGGTGCGATCTTGGCTCACTGCAACTTCTACCTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCTTTCTGAGTAGTTGGGATTACAGGTGTGTGCCACCATGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGAGCTCAGATGATCCATCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACCGCGCCCAGCCTGCAATGAGCTATGATCGCGCTTCTGCACTCCAGCCTGAGTGAGACTCTGACTCTAACAAACAAACAAACAAACAAAGACAGACAAACAAACAAAAAAAAAGAAAAACAGGTGGAGGGGGCACTTTAGCTCGAGTGGTTATGAAAGGCCTTGCCGAGGAGATGTTTGAGCTGAGAACTTAGGGGATGAAGGATCAGGGAGAAGCCTGTTCTAGGCAGAGGAAACAGCAAGTGCAAAGGCCCTGAGGTGGAATCTCACTGGTGCGTGTGAACAACAGAAGGAGGCAGGTGTGGCTGCATTGCAGGAAGTGCAAGGTGGAATGGAAGAGGTGGCCCTGGGGTGCTCCCCATCCATCTTTACTGACCCCCAGAGGCTCAGGGAAGGGGGCCAGGCTGGGATGTCTGGGGCAGCCCCCAGACTCATCTCCAGGCTGTTCCTCCCTAG
Seq C2 exon
GTGTACAACCCCTACCGCTTTGACCCGGACAACCCACAGCAGCGCTCTCCACTGGCCTATGTGCCCTTCTCTGCAGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-CYP4F22:NM_173483:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)