BtaINT0046306 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8632291-8634089:-
Coord C1 exon
chr7:8633960-8634089
Coord A exon
chr7:8632425-8633959
Coord C2 exon
chr7:8632291-8632424
Length
1535 bp
Sequences
Splice sites
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
3' ss Seq
CACTGTTCCACATTCCCCAGGGA
3' ss Score
7.75
Exon sequences
Seq C1 exon
GTCATGACACAACTTCCAGTGGGCTGTCATGGGTACTGTTCAACTTGGCCAAGTATCCAGAGTACCAGGAGAAGTGCCGAGAAGAGATCCAGGAAGTCATGAAAGGCCGGGAGCTGGAGGAACTGGAGTG
Seq A exon
GTCAGTCTTGGGTCCTGGGGATATTGGGGGCAGGTTGAGTTTAGAGCCTTGAGTATTAATCTCTCTACCACTTACTGTCTAACTAACCTTAGACAAGTCACTTAAACTCCTTGAATTTAAGTTTCTTCAACTGTAAAATGGGATGACAGTAATGCATAGGCATTCTTCATAGTGCAGGAATTCTTAGTTGGGAATGTCTTAGTCAGAAAAGGTTGCAATAATGCTGTGTAACAAACAGTTCCTAAGCTCAGTGGTTTGCAGCAAGCATTTATTTATTGCTCTTGTCTGCACATACTTTTTGCTCTCATCTGCATATTTCTCTTCTTGCTGCTGAGCTTCACTGAGTTGAATAGGTTTGTTTCCAAGCTGAGGTTTGAATTCAGATCTGTCCTACATGTCTCCTCATTCTCCTTGGACCAGCAGCCATACTGGGCATGGTCCTCTCAAGGCAGACTCCAGAAGCACAAAGAATCACACAATTAAAAACCTCTGCTTGCACTGTAACATTCTATTAGCTAAAGCATTTCACCGGGCTGATCCCAACATGAGTCGGGTGGGACATAGACTCCATCCATCTGAGCTGAAGGTACTCAGAATCACATGGCAAAGGGCATGGTGCCTAATTCCAGTGTAGTGGGGAAGTGTAAGAATCAGGAATAATAATCTAGTTTACTTCAGATGTGTGCTGTGTAGAGCTGATTCTGGATGATGCAAAGAAAACACAGCATTATGCAGCATCAAACAACTAGAAAGTCCCTTTTGGTTCATTATCAGTCATTTGGATTATGAACTCAGGGAGACACTTTCAGCTGATGCCATCTTACACTGATGCCATCTTACATTTATGCCATTTTACACCTTGCTAATCTGCCTTGTTGAGGAAGGGAGAAGATGCCTCAGACTCTGAGAATTGGCAGGAGGTGGTGTCTAGCCAGAACTCAACACCTGTCTTCTCTTTTCCCAGTGGTGTTTATATTTATGGATCTCTTTATACCAGGCATGCCATTTGCCCTTTGTGGTAGCAGCATAAAATTTCTTTGAAAGACAGCCTGTTAGTGTAAAGAAAACAATCTAGATCATGAACAATTATAATTAATCTAATGTTGGGCACTGAAGTCCAAAGGAAAAAAAATTAATACAGTATAAGGAGATAATGTGTGGGTTTATAAATACTGAAGTTGAACCATTCAGGCTGGTAAATCGGTGCTACTCCAGGTTGCTCTGTTTGTCCTGGCACATCCCCAGGGGTGCCCCCTGACCTCCACACAGTTCATCAGTTAGAGAATTAATGCTGGGCTCAAAGACATCCAGCTAGCGCTGCTCTGATTGGTCAGGGGGCAGATATTTTTTCTGTTGAGGATTAGAGGTGTGTGCAGGGCATAACTGCAAATGCCTGAAGTTGGGGGAAGTCTGAAATCCTGGACTGGTTTCCTGTGGTTGCTCCTAATAGCCTATGCATATGTGTGTGTGTGTCTCTAGGGGAGGGGTGGCGTCACGGCCTGGCCTCTAGTCACCCACTGTTCCACATTCCCCAG
Seq C2 exon
GGACGACCTGACCCAACTGCCCTTCACCACCATGTGCATCAAGGAGAGCCTCCGCCAGTTCCCACCTGTGACCCTGGTCTCCCGCCGCTGCACGGAGGACATCAAGCTCCCAGACGGACGCATCATCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933:ENSBTAT00000066325:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
NA
C2:
PF0006717=p450=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGACACAACTTCCAGTGGG
R:
CTTTGGGGATGATGCGTCCG
Band lengths:
263-1798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]