MmuINT0045430 @ mm10
Intron Retention
Gene
ENSMUSG00000061126 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:MGI Symbol;Acc:MGI:2445210]
Coordinates
chr17:32486946-32489753:+
Coord C1 exon
chr17:32486946-32487075
Coord A exon
chr17:32487076-32489619
Coord C2 exon
chr17:32489620-32489753
Length
2544 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CACAGTTCCTTTCTCTTCAGGGA
3' ss Score
8.91
Exon sequences
Seq C1 exon
GTCATGACACAACATCTAGTGGGCTGTCCTGGGCACTGTTCAACCTGGCAAAGTATCCAGAGTACCAGGAGAAGTGCCGGGAGGAGATCCAAGAAGTCATGAAAGGCAGAGAGCTGGAAGAGCTGGACTG
Seq A exon
GTAAGTTTGGAGGGTCAGGAGGATGGAAGGGAGGAAAATGAGTCTTGGGTGTGAATCTCTGAGCTGCCACTTTCTGATTGTGTGGTCTTAGACAAGTCCCTGCAGCTTTCTGAGTTCCAACTCATATTGGGATGATTGCGATGCCTGACCCTGGTTCAGCAGTTTCCAGGACAACTTCAGCAGCAGCTGTTGCTGCCCCACCACAGAACATATAGCCCTCAAATTCAGTGGCTTGGGGCAAGCATTTAGTTGCAGCTTTGACCTACACAAGATTTCCATGGCTACTGGGCTTCGTTGAATGGAGTGAGGCTGCTTCCAAATTGTTGGCTGGGTTCAGGTCTTCTCCAAGTGCCTCCTAACTCTCCTAGGATCTGGGGCTACTCTGGGGCGTGTTCTTGTCAATGCAGATTCCAGAAGTGTCAAAAAAGTTCTATGTGCACTGAAACATTGTGGAGGAGGCAAGTCACATGATGAAGCTCAGTATGCGTGGGGCAGCGAAGGCCTGTAAATAGTGCCTTTGGACACATCACCCTTTGGGATGGAATGGCATGCCATGTGATTGTGATGCAGAGAGGAAGTGCAGAATAGAGAGCAGGAAGATAGTCTTAAGATGTAAGTTGACTCTGAGTGGTACAGAGAGCCCAGCACTGAAGCCAGGCATGGTGGCACACCTGACATTCCAGCTTTTAAAAGGATGAAGCAGGAGGATCAGGAGTTCAAGGCCAGCCTAGTCTACATATTAAAACTGAGGCAAGCCTTGGCTAATTGAATCACTTTCAAAAAAAAAAAAAAAAGAGTTTGGGAGATGTCCCATTGGTAAAATGCTTGTCTTGCAAACGTGAACGAAAATCCATGCTAAAAGAAAAGCTGGTGTCTTAGTCAGTGTTCTGTTGCTGTAAAGAGACACCATAACCATGGCAGCTCTTATAAAATTTAATTGGGGCTGGCTTACAGTTTCAGAGGTTTAGTTCATTTCCATCACGATGGGAAGCATGGCAGTGTGCAGGCCGACGTGGTGCTGGAGAAGGAGTTTAAGAGTTGTGCACTTAGATCTATAGGCAGCAGGAAGAGAGAGACATTGCCCTGCTTTGGGCCCTTGAAATCTCAAAGCCCATCCTCAGTGACACACTTCCTGTGATAAGGTCACACATCCTAATTATTTCAAATATATGAGCTGATAGCGCCTATTATTCAAAACACCACAGCTGGATATGGTGTCAAACTCTTGTCGTCCCAATTCTGGGGAGGTAGAGACAGGTGGACCCCTGGGCTCCCTAGAAGTCTAGGGGCTTCTTGGCCAACGAGAGACCTTGTCCAAATATAAACAAATAAAGTAGATGGTGCATGGTGCCTGAGAAATGACATTGGAAGTCCTCTGGCTTCCAAGGTATTCACACATGACATGTGGATAAATACCTAAGTGTATACATGAACCCACACATTCTGTGTACACCTTCAGGAAGACTGTCAGTTGGGTACCACAGTACCCTAAACATCCTGTCACTTTTGCCTTTATAACAAAGGGAGACAGCAGAGGGTCTGACTAGGAAGTCCAGCAGCAGATGATGCCTGCCAGGATCTAAGTGCTCTTTTGTTTTCTTGGTCGTGTTTATTTATATCTATTGGTATCTGTATGACAAGGGTTTCTTTGGCTCTTTATAACAGGAACACAAAGCTTCTGTCAGGGCTGGAGAGGGGCATAGTGGTTAAAGATGCCTGCTACTCTTCCAGGGCTCCCAAAGTCCAACCCTAGCACCCACACTGGGCAGCCAGATCACCATTGCTTGTAACTCCAGCTCCAGGGATCTGATGCCCTTTTCTGGCATCTACAGGCACCTGCATATGTGTGAGAAGCCCCAAACCAACCTGCTAGAGCTAGGTGCGGTGATGCACAACTGTAATACCAGTATCCTGGAGGTTGAGGCAGGAGGGGTGCTACAAGATAGAGACTAGCTTGGTCTACATAGTGAAAACTTGACTCAAAACAACACACACACACACACACACACACACACACACACACACACAGTGTCTTGATCTTAAAAAAATGAACTAGACCATAAACTAATAGTTATAATTAGTTTAATCTGAGCTCCCAAGTATAATAAACTATTCTGAAATCTGCAATAAAGCATTTTAAAATAAATACAACAAATGAAATCTGGAAAGAATGCATACAAACTAGTAACTTGCTGTGACTTTGAGGTTCCCAGCTGCCCTCACATCTCCCATGATTATACAACAATTCATCAATGGTAGGTTAGTCTGGGGCCCAGTGGCAGCCCCAGCAACCAGGACCATTGCTTTCTGTTTTCATTTGTCATTATTGTGATTGGTGGATGGACAGATAGTTTTTTCTGAACCTAGGACCTCATGAATATCAACCAATTGGACTGTCACTGAGCTATATTCCCAGTCACCTCTTCCTTTTTTTGTTTCAATTGATTGATTGATTGATTGTGTGTGTGTGAGCATGTGAGTGTGCGTATGTGGGTACCTGCATATGTGCATGTGTTCAGGGAGTCACAGTTCCTTTCTCTTCAG
Seq C2 exon
GGATGACCTCACTCAGTTGCCCTTCACCACCATGTGTATCAAGGAGAGCCTTCGCCAGTTCCCACCTGTGACCCTCATCTCTCGTCGCTGCACAGAGGACATCAAGCTGCCAGATGGACGTGTCATCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061126:ENSMUST00000003413:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
NA
C2:
PF0006717=p450=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types