BtaINT0046309 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048257 | CYP4F3
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 3 (CYP4F3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046391]
Coordinates
chr7:8585781-8586061:-
Coord C1 exon
chr7:8585928-8586061
Coord A exon
chr7:8585846-8585927
Coord C2 exon
chr7:8585781-8585845
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
3' ss Seq
CACTCTCTCCTCTGCCATAGGGA
3' ss Score
9.75
Exon sequences
Seq C1 exon
GGAGGACCTGGCCCAGTTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGTTTGCATCCCCCAGTAGCGGTCATCTCTCGCCTCTGTACCCATGATGTTGTGCTCCCAGATGGCCGAGTCATCCCCAAAG
Seq A exon
GTGCTCAAAACAATGGGTGTGAGGGAGGCTGGTGGTCCCATCAGCTGAGACTTTGACCTGACCACTCTCTCCTCTGCCATAG
Seq C2 exon
GGAACATCTGTGTCATCAGCATCTTCGGGATTCATCACAACCCATCAGTCTGGCCAGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048257:ENSBTAT00000036384:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTGACCATGTGCATC
R:
GCCAGACTGATGGGTTGTGAT
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]