GgaINT0035777 @ galGal3
Intron Retention
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22611224-22611825:+
Coord C1 exon
chr8:22611224-22611357
Coord A exon
chr8:22611358-22611760
Coord C2 exon
chr8:22611761-22611825
Length
403 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
GAGTATTTTCTCACTTCCAGGCT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GGAGGACCTGGGGAAGATGACATACAGCACCATGTGCATCAAGGAGAGCTTGCGCCTGTTCCCACCCGTCCCTGCAGTGTCCCGAAGGCTCTCTAAACCTGTTACGTTTTCTGATGGGCGCAGCTTACCTGAAG
Seq A exon
GTCTGTGTTCATCCTTCTTGCTGGTGTCCATCACAAGGGTGGAGGGGGCTGGTTGGGGGGCTTCCAGTCTTACTTCTCTCTCCGAAAGGCTGCACAGAGCCACCACACTCATTGCGCCTGGAAGGGTGAATGGTGAGGGCCCAGAACCTGCATAATGCTGATCGTGTCCAAGAGTAGGTGTTCACCCATCAGTACCAGAGTGGGGCCCAGCTTTGAGACCATTATTTCTTCCATGGGAAAGATTCAGAGCTAACCCATGTGGACAGGCCGGGAAATATTTCTGCCAAATCCTCCGCCACAGCCCCAGCAGAGTCCAGGGAGGGAGGGCATCCCCCAAACACTCTCAGTCTTCACCCTTCACATGATGAGTATTTTCACATCATGAGTATTTTCTCACTTCCAG
Seq C2 exon
GCTCCCAGGTTTCGTTGAACATATTTGGTATCCACAGGAACCGGGATGTATGGGAAGATCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
NA
C2:
PF0006717=p450=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACCTGGGGAAGATGACA
R:
CTTCCCATACATCCCGGTTCC
Band lengths:
190-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]