RnoINT0044646 @ rn6
Intron Retention
Gene
ENSRNOG00000043513 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:RGD Symbol;Acc:628719]
Coordinates
chr5:133932443-133933750:-
Coord C1 exon
chr5:133933617-133933750
Coord A exon
chr5:133932508-133933616
Coord C2 exon
chr5:133932443-133932507
Length
1109 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTTC
5' ss Score
0.53
3' ss Seq
CTGTTTCCCTTCTGCTTCAGGAA
3' ss Score
11.26
Exon sequences
Seq C1 exon
GGAACAGCTGGATGAGATACCTTACACTACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCCATCCCATCCATCTCCAGGGAACTCAGCAAACCCCTTACCCTCCCAGATGGACACTCGCTGCCTGCAG
Seq A exon
GTCTTCACGTTCTTCTCCTAAGCATGAGATCATGAAGGTCACAGTGATGATGATTTGTAGGATTTGGAGCTTTGGGGAATCTCTAGGTTAGAATTAGGCAGCTACTGAAAGCTCAGAGGATAATTCCTCAATCATATGTGAGCTTCAGTGACCTTCTTAAGCCACATAGCCAATTGGAGAGCTGTTAGGTTCCAGCCTCACTTTGAGAACCCCAGGCAAGGGTTTCGTCCATTATGGAACACTGTCTCTACGATAATATTTGTGAGAGCCACAGAACATGAGCATCATTATGTTAATGTGAGGGGAGTCTTTATCACCATATCAACCTTAGGAGGGAATAATAAGTCTCATTTTCCCCTTGTAATGTGATCTTAACAGATGTGTGGTCAATATTCCATAGTTTACAAGTATTTCTACAGTATTTTAATGTCTCCAAAAAACCACTGGGGATTGATTCCATATATTCACAGAAGGTTAATAGATACAAAGCAAAGCTAGAACTCATAAAGACCCTATACTTGAAGTGCACATGTCTAGGCAGGGCACATGGGTGCAGTGGGATCTCATGGGATACTCTTTCACTGTGCTTTAGTATCAATAAGTCAGTAGGAGAACGGAGGTCAACCCTTCAACCTCTGTGATCTTGTTGACAAAACCAGAATTATTGTGGATAAGAAAATGATACTCAAATTCCCTCTCCTTTGTCTTTTTTTTTAAACTACCAACCATATCAATGTTTGCCCCATCTCCACCTTTTATGAATAACCAGTGCCAAGAGAAATTAGCCACAGGTGGAATAACAGAACTGTCTCTATGAAGTGCTAACTGTTAACAAACACTTAAGTAATTTCCAAACAAAGCAGAAAACATAAGCACAGTTTGGTGCTTTGGAGGGACACTGACAGCTTCCTAGGATAAAATCATGAATTAAATAAATAACTGCTTTGAAAACTGAGGTTTAAACCCAAGCCCATCTTCCTTCCCCCTTGTCCTTCCCTGGTGGAGAATTGGTGCACAGTTCAGCGGGAGCTAGCACATTTTTCCTGGAAGAAAAGTCTTGGCAGAGAACATACTACAGCAGCCTTTGCTCTGTTTCCCTTCTGCTTCAG
Seq C2 exon
GAATGACTGTGGTCCTTAGTATTTGGGGTCTCCACCACAATCCTGCTGTCTGGAAAGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043513:ENSRNOT00000011985:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
NA
C2:
PF0006717=p450=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGCTGGATGAGATACCT
R:
TTTCCAGACAGCAGGATTGTGG
Band lengths:
190-1299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]