GgaINT0039283 @ galGal3
Intron Retention
Gene
ENSGALG00000020687 | E1C120_CHICK
Description
NA
Coordinates
chr8:22600178-22600467:+
Coord C1 exon
chr8:22600178-22600311
Coord A exon
chr8:22600312-22600402
Coord C2 exon
chr8:22600403-22600467
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CCTCCTCAACTACTTTACAGGCA
3' ss Score
7.13
Exon sequences
Seq C1 exon
GGAAGACCTGGGGAAGATGACCTACAGCACCATGTGCATCAAGGAGAGCCTTCGCCTCTACCCACCGGTGCCTGGCGTGTCCCGGCAGCTCAGCAAGCCCATCACCTTCCATGATGGTCGCACCCTGCCAGAAG
Seq A exon
GTCTGTGGATCCTGGTTCTGCTCAACATTGTAGCAGTAAAACTGTGTGTCTGTGCCACTGAGCCCTTTTCTCCTCCTCAACTACTTTACAG
Seq C2 exon
GCACTATCACTGCAATAAGCATTTATCTCATTCACCGAAATCCCTTGGTATGGAAGGATCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020687:ENSGALT00000017043:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(29.2=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGTGCATCAAGGAGAGC
R:
AGGATCCTTCCATACCAAGGGA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]