HsaINT0044451 @ hg19
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450, family 4, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:2644]
Coordinates
chr1:47282720-47283701:+
Coord C1 exon
chr1:47282720-47282853
Coord A exon
chr1:47282854-47283636
Coord C2 exon
chr1:47283637-47283701
Length
783 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
AACCTCTGTTCTGCCCACAGGAA
3' ss Score
11.29
Exon sequences
Seq C1 exon
GGATGATCTGGGCAAAATGACTTATCTGACCATGTGCATCAAGGAGAGCTTCCGCCTCTACCCACCTGTGCCCCAGGTGTACCGCCAGCTCAGCAAGCCTGTCACCTTTGTGGATGGCCGGTCTCTACCTGCAG
Seq A exon
GTGGGATGGGTGGATTTGGGGGTGGAAAAGGAGTCCCTGCATGCTCCTCTGGCACCCTCTGTGCCTTTAGTCAAATCTTTGCACTTTTGGGGAAGAGCTCAGGCTTTGCGTTCAGAGAGCCCTGGGTCTAAATCCCAGCCCCACAACATATTGATCAATTCTTCTACCTCTGAGCCTCCATTTCCCCTTCTGTAAAATGGGGATGAGAAGAGTATCTATGTTTCTAGGCTGCTGTCAGGATTAAAGAGAATGTTCACCAAGGCTGCCATGTACCACCATGCAGGTCATGCCCTGAACAGCACCAGGGAGCAACACTCACATAGACTATGATGCTGTGCAGTGTGCAACCTGCACAACTGTATGTGGTAGCTTCATAAAGAGTGTTAAGCCTGTACCTGGTTCATAGCAAGCACCTGGTGAATGATAGCTGTTACTGTTGGCAGTATAATATTATGAATAATAACTTCCCAAGAGTCAGTTAGCTGAAAAGGTTTAATAGTTCCTTCCTGTTCTACCTCATGATGGATGGGTTCATTCTCCCCTTTATTCATCTCACAAATGTCTATCAGGTGCTGTACCCAGTGCCGGGATTACAGGAACTGGGCATCATGATGATCAAAGTACTGTGATGAGTCGGATGTGGTCATGAACGCTCTGTCACTGGCAGTGGTCAGGCAGGAGCTGGCACCCCAGTTAAGGGGTCACTAGGGGACTCTGACCTTATGTGGAGGTAGGCCTGGCTACCCAGGACTACCTGGTCACCAACCTCTGTTCTGCCCACAG
Seq C2 exon
GAAGCCTGATCTCTATGCATATCTATGCCCTCCATAGGAACAGTGCTGTATGGCCCGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973-CYP4B1:NM_001099772:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(18.5=95.7)
A:
NA
C2:
PF0006717=p450=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATCTGGGCAAAATGACT
R:
CTCAGGGTCGGGCCATACAG
Band lengths:
199-982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)