RnoINT0044543 @ rn6
Intron Retention
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134509844-134511200:-
Coord C1 exon
chr5:134511067-134511200
Coord A exon
chr5:134509909-134511066
Coord C2 exon
chr5:134509844-134509908
Length
1158 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GGCCTCTTTTCTGCTTACAGGCA
3' ss Score
8.93
Exon sequences
Seq C1 exon
GGATGATCTGGCCAAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTATACCGCCAGCTCAACAAGCCAGTCACCTTCGTGGATGGCCGCTCTCTACCTGCAG
Seq A exon
GTAGGTGGTGGAAACAGTGAGGCTGGAGTGGAAGTCCTCTGGATGCTCTTCGGTCTTGCCTGGACCACTGGACTATCTTTATACCATGCGGAGAGAGCTCAGGCTTTCTGTGCAGAGACCTGGGCCTAAGCACCAGGCTCACAAAGAATGAGTAAAATTGCCTCTGCCCCCAAGCCCCAACTCCTTCTTCTGTACAGAGAATATAAAGTTCTTTTTTCTTCTAGGTTTCAGGGTGGTTATATGGATTCATTTTCCTGTGGATTGAAATAACAAGGAACACACACACACACACACACACACACACACACACACACACACACACACTCACTGTTCCTTTGAGGAATTGTGAGAGTTGGGTTTGCTTTTGGGTTTCATTGACCATTAGTGTGATAGGACCAGGCATGGCTAATCACTGGGCACACTTGCTGCACTGTTCTCTGGGGAGGAGTTCTTATAGCTTGAAAATTTTCTCTTTCTCTCTTTTTTTTCTTATGCTTAAAACTATATCAAGTCGTTCTACTATGGTACTACTGTTCAACAACCAAATTGTGATGATATGCATAACATAAAAAAGCAAATGAGCATAGAGGGGGAGGAAGAAGGTATTGTCCATAACTGTTAGAATTTAAGAAGACAATGATTTTTAGGGTCTTCATGCACACTCTGCCTATTGTGCTTGGAGCCTGGACACTCCAGGGAGGTGATTCACATAGACTATGAAAAAATGCACTCACATGTTCAATTCTGTGTTGTGGCTTCATAAAGGTGTTCAGCCCCGAGCCTGACATATAGCAAGCATTGAATGAATGGTATCTCTTGTTATTACATCAACTTCCTGAGAGCTAGTGAATTGAAACCCAACAGGCTCTAAGAAGCAGCTTCTGCTTGTTCTCCATTGTGGTAGGGTAGGTTCACAGTTCTTTGTTTTAATCCCACAGACATCTGGGTTAGACACTCTGCTCAGTTCTGCGATATTGGAGCTGCAACTGCTGCTGATTATTAAAGTACTATGACTGTGATCAAGAGCTCAGTGTCGCCGGCAGTGAACCAGCAGAGGCTGGTGTCTCAGACGGGGGACATTAGGGGATTCAGGCTTAATGTGGAGGTGGCCCCGCTGCCTCATGATCCCTTGCTCTCAGGCCTCTTTTCTGCTTACAG
Seq C2 exon
GCAGCCTGATCTCTCTGCACATCTACGCCCTCCACAGGAACAGTACTGTGTGGCCTGATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078:ENSRNOT00000013321:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
NA
C2:
PF0006717=p450=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATCTGGCCAAGATGACC
R:
TCTGGATCAGGCCACACAGTA
Band lengths:
198-1356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]