MmuINT0045357 @ mm10
Intron Retention
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115625824-115626940:-
Coord C1 exon
chr4:115626807-115626940
Coord A exon
chr4:115625889-115626806
Coord C2 exon
chr4:115625824-115625888
Length
918 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
AGACCTCATTTTGCTTACAGGCA
3' ss Score
6.74
Exon sequences
Seq C1 exon
GGATGATCTGGCCCAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTGTACCGCCAGCTCAGCAAGCCAGTAACCTTTGTGGATGGCCGCTCTCTACCTGCAG
Seq A exon
GTAGGTTGCTGGAAACAGTGAGGGTGGAATGAAAGTCCTCTGGACGCTGTTTAGTATTGTCTGTATCACTGGACCATCTTTACACCATGTGGAGAGAGCTTAGGCTTTGTGTGCAGAGCCCTGGGCCCCAAGCACCAGGCTCACAGTGTATGGGTAAACTTGCCTCTGCCCCCAAACATCCAACTTTCCAACTCCCTCTTCTATAAAAAGAATATAAAGTTTATTTTCCTTTTAGGTTTCACGGTAGTTATATGGATTTATTTTTCTGTGGATTGAAATAACAAGGATATATATATATATATATATATATATACATATATATGTATATATATATATACACATATATGTATATTATACACACACATACATACATATACATATGTAAATGTATATATATAGGAATAGGTATACGTATGCCTATACATATATATTAGTGAGCATTCCATAGCTTCAGTAATAGTGTCAGGCCCTGGCAGGAGTTCTTGTAGCTTGAAAATTGTCTCTTTCTCTATTTTCTTCTGTTTAAAACTATATTAAATTATTCTACTGTCGTACTATTGTGGCCTTGACAAGATCAGGGAGATGATTTGCATACACTATGACACAATGCACGTACATGTCCAATTCTGTGTAATGGCTTCATAAGTGTTCATCTCTGAGCCTGACATAGTAAGCATCAAATGGATATTATCTCTTATTACTAATAGCACAATAACTTCCTGGGATATTGGAGCTGCTGCTGCTGATTATTATTATTAAAGTACTTTGATTGTGACCAAGAGCACAGTGTCACTGGCAGTGAACAAACAGGCAGAGGCTGGTGTCCAAGATAAGGGGACATTAGGGGACACAGGCCTAATGTGGAGGTGGCCTGGCTGCTTCATGATCCCTTGTTATTAGACCTCATTTTGCTTACAG
Seq C2 exon
GCAGCCTGATCTCTCTGCACATCTATGCCCTCCATCGGAACAGTGCTGTGTGGCCTGACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713:ENSMUST00000102707:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
NA
C2:
PF0006717=p450=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGATGACCTACCTGAC
R:
CTCTGGGTCAGGCCACACA
Band lengths:
190-1108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types