HsaINT0044554 @ hg38
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450 family 4 subfamily X member 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr1:47046467-47048629:+
Coord C1 exon
chr1:47046467-47046600
Coord A exon
chr1:47046601-47048564
Coord C2 exon
chr1:47048565-47048629
Length
1964 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTTT
5' ss Score
2.36
3' ss Seq
TTATTTCCCTCCTTTCTTAGGGA
3' ss Score
11.24
Exon sequences
Seq C1 exon
GGACCAGCTGGGTGAGATGTCGTACACCACAATGTGCATCAAGGAGACGTGCCGATTGATTCCTGCAGTCCCGTCCATTTCCAGAGATCTCAGCAAGCCACTTACCTTCCCAGATGGATGCACATTGCCTGCAG
Seq A exon
GTCTTTACATTCTTTTCCTAAGCAGTTCTTAGAGGCTATGGGATCCTGGAGACCACAGTGACAAAGATTAGTGAGTCTCTTAGCACTTGGAGAAGTCAAAAGATAATGCTAACATGTGACTTAGGTTTTATCACCTATGAGGAGCTCAGAGGATAATGCTTTGGTCAGACATGAATTTCAATGACTTTCCCAAAGGCACATAGCCAGTTGCAGCAAAGCTAAGCCCAGAATCCATGTCTCTGGAATCCCAGCCCAGGGTCTCTTCCATTGTGGGACATCATTTCTAAGATAATCTTTGTTTGGCTGAGTTTGAGACCGAGCTGAAACTTCATGGAAAATAGCACCAGCATCTTTATCTGAAAGACCAAGGGGGATCTTTGGCCTCATCATCATAATATCACCCTTATAAATATACAACATTTAATAGTTAATATAGAGCCTTCAGACCCATTATCTCATTTTTCCCCTTGGAATCCAATGTTAACAGACGCTTATACAATGATTTACAGTTCACTGAACACTTTTAAGTACTTTCAATGTGGCCCAAAATCCAGAGGCAGCCCCAATGTGTAGATGACATTAACTGATGTGAGCAGAGCTAGAACTTGTGCGGAGACCCTGAGTCTGGAGCCTAGAGTTCTTCGGAACAACACAGGTTTCTGAGCAGGGCTTATAGGAAGCAGAGGGGTCATGTGAGACATATTATCTGATTCAATGTTCTATTAATTCATGTCTTAGGAAGCAAGCCAACAGGATTGCTTCTGGCAAACACCTACAGCCTGTTACTGTAACTTTGCTGACAGACCCAGAATTAATTTCTGGAAGCTAGAATTATTTCTGGAAACCAAATAACCCTCACATTCTCTCTCCTTTGTTTTGTACTCTGTTTCTCCCCAAACCACATGGATATTTGCCAAAATTCTCCACTTTCCATATGTGAATAGCACCAATGGAAATTTGTCATGGGATCTGCATGACAGAATCACAGTTCTGTGTGTGTGTGTGTGCGTTTTCCTCTCAAGACAGAGTCTTGCTATGTAGCCCAGGCTGGAGTACAGTGGCGTAATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTTAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCACACCACGCCTGGCAAATTTTTGTATTTTTATTAGAGATGGGGTTTCACCATGTTGGCCAGGCTAGTCTCAAGCTCCTGATCTCGAGACCAGCCCTCCTCAGCCTCCCAAAGCGCTGGGACTACAGCCATGAGCCACTGCACCCAGCCAGTTCTGTGCTTTTATACCTAAATTGTCTCCAGGAGTGCTTAATAGTCCATTAATAGGTATTTAGGCCAGGCACAGTGGCTGACGCATATAATCCCAATATTTTGTGACACCAAGGTGGGAAGACTGCTTGAAGTTAGGAGTCTGAGACTAGCCTGGGCAACATAGGGAGACCCTGTCTTTACAAAAAAAAAAAAAGAGAGAGATAGCCAGGCATGGTGTTGCATGCTTGTATTCCTGCCTACTTGGGGGACTGAGGCAGGAGGATCACTTGAGCTCAGAAGTTCAAGGTTACCGTGAGCAATGTTCACGCCACTGCTCTCCAGCCTGATTGACAGGCCAGACCCTGACTCTAAACAAAAACAAAAAACAAATATTTAAGTAATTTCCAAACATAGCAGAAAATATAAGCATGGTTTATCACTTTGATATGACACCAACAGCTACTTAAGATAGAATCATGAATTCAGTAAATTGTTGTGTGGAAAGCTAAGGTGCCAACCCAAGCCGCATCTTCTTAGGTGCTCCTCACTGGTGTCATCAGCTACAGCAGGCAGAGCATTGCCAGGAGCTAGCTCTTCCCTTCAAGAACAAAAGTCTTGTTTAAGAGCACAGTAGCCCACAACTTGCTCTTTCTCCTGCAGTCTCTTTTATTTCCCTCCTTTCTTAG
Seq C2 exon
GGATCACCGTGGTTCTTAGTATTTGGGGTCTTCACCACAACCCTGCTGTCTGGAAAAACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377:ENST00000371901:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.8=100)
A:
NA
C2:
PF0006717=p450=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGTGAGATGTCGTACA
R:
TGGGTTTTTCCAGACAGCAGG
Band lengths:
191-2155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development