MmuINT0045475 @ mm10
Intron Retention
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:115111618-115112939:-
Coord C1 exon
chr4:115112806-115112939
Coord A exon
chr4:115111683-115112805
Coord C2 exon
chr4:115111618-115111682
Length
1123 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTTC
5' ss Score
0.53
3' ss Seq
CTGTTTCCCTTCTGTCTCAGGTA
3' ss Score
11.41
Exon sequences
Seq C1 exon
GGAACAGCTGGATGAGATGTCATACACCACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCTGTCCCATCCATCTCCAGGGAGCTCAGCAAACCCCTTACCCTCCCAGATGGACACTCACTGCCTGCAG
Seq A exon
GTCTTCACATTCTTATCCTAAGCATGAGATCATGAAGGTCACAGTGATGATGATTCATAGGATTTAGAGCATTGGGGAATCTCTAGGCTGGAATTAAGCAGCTATTGAAAGCTCAGAGGATAATTCCTCAATCATATGTGAGCTACAGTGGCCTTCCTAAGCCACATAGCCAATTGGAGAGCTATTAGGTTCCAGCCTCACTTTAAGAACCCCAGCCAAGGGTTTCATCCATTATGGGACATTGTCTCTATGATAATATTTGTGAGACTGAGTGTGAGATCTACAGGACATGAGCACCATTATGTTAATGTGAGAAGGGGAGTCTCTCACCACATCAACCTTAGAAGGGAATAGTACTTCTCATTTCCCCCTTGGAATATGATCTTAACATACATGTGGTCAGTACTCTACAGTTTATAAGCACTCCTACAATATTTCTAACGTCTCCAAAAACCCATTGGGGATCCCCTATATTCACAGAAGGTTAACAGACATGAAGCAAAGCTAGAACTCACAGAGACCCTGTACTTGAAGTGCACATGTCTGGGTAGGGCACAGAGGTGGCAGTAGGATCTCATAAGGCACTCTTTCACTGTGCTTTAGCATCAAGTCAGCAGGAGAACTGAGGGCAACCCTTCAACCTCTGTAAGCTTGTTGACAAAACCAGAATTATTTTGGATAAGAAAATGATACTCAAGTTCCCTCTCCTTTGTCTTTTTTTCTTAATCACCAACCATATCAATATTTGCCCCAATTCTCCACCTTTTATGAATGAACAGTACCAAGAGAAATTAGCCACTGGTAGAATAACAGAACTGTCTCTATGAAGTGCTGTCTAGCTGTTAACAGATACTTAAGTAATTTCCAAACAAAGCAGTAAACTTAAACACAGTTTAGTGCTTTGGTAAGACACCAACAGCTTCTTAGGATAAAATAATGAATTAAGTAAATGACTGCTTTGAAAACTGAAGTTTAAACCCAAGTTCATCTCCCCCTTGTCCTTCCCTTATGGAGCATTGGCACATAGCTCTGCAGGAGTTAGCTCTTTTCTCCTGGAAGAAAAGTGCTGTAGTGGCAGAGAGCACACTACAGCAGCCTTTGCTCTGTTTCCCTTCTGTCTCAG
Seq C2 exon
GTATGACTGTGGTTCTTAGTATTTGGGGTCTCCACCACAACCCTGCTGTCTGGAACGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155:ENSMUST00000106545:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
NA
C2:
PF0006717=p450=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATGAGATGTCATACACCA
R:
CTTTGGGTCGTTCCAGACAGC
Band lengths:
193-1316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types