BtaINT0046313 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048257 | CYP4F3
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 3 (CYP4F3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046391]
Coordinates
chr7:8606854-8607671:-
Coord C1 exon
chr7:8607527-8607671
Coord A exon
chr7:8606908-8607526
Coord C2 exon
chr7:8606854-8606907
Length
619 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
TGTTCTATTTCTTGTATCAGCCA
3' ss Score
5.54
Exon sequences
Seq C1 exon
GCACAGAGCAATGAGGAGAGCATGCGGCTGGTGGAGGAGCTGGGCCACTACTTCCGCGACGTCCACCTCTGGTGGATGGGGCCCTTCTTCCCCATCCTGCGGCTTGTTCACCCTAACTTCGTTGCCCCTCTGCTCCAGGCATCAG
Seq A exon
GTATCTCTCCCAGGAGCACCCCCTCCCAGCCTCTTCCCTGGCCCCTGCTCCCAAGCCCTTCTCACTCCTGGACAGACCAGGTTGAGCAGGAGAATGGACAGCATTGACAGAGACCTGCTGGGTGACTCTGGGAAAGTCTCCAGTTCTCTCTGGTTGCCGAAGTCTTTTTTCAGTTTTGGGTGGTGGAAAATCAACACTATTGGTCCACTATGTCAGATGTTCCAGGAGAGGTCAGAGGGTGCTGGGGCAAGCATGATGTCCTTGGTGCTTAAAAGTGCATTTTGTAGAGTGCTGTGCTGTGCTTGGGGATTTAGGATATGCTGAACCTCTTAGGAGCCATGTCCAGGTGTGCTGGGATGTGCTGTGTCATGTTGGAGTGTGTCTAAGCACATAGGGTTGTGTTGATGGGGTCCACTCTATGCTGCAGCCTGGTCTGGTCCCCCGTCCCCCCCACCCCCACCTCCTACCTCCTCCAAGCTTCCTCTACTCTTGGCCCCATTCCTGCTATGCTGAGCTTGGAAAATTCAGACCGCTTCCTGGGAGCCTCCAGCCCCCACCAAAAATTATTACTCCGCCCCACCATCCACCATGGCCCCTGATGTTCTATTTCTTGTATCAG
Seq C2 exon
CCACCATCATACCCAAGGATATGTTTTTCTACAGCTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048257:ENSBTAT00000036384:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGCAATGAGGAGAGC
R:
AAGCTGTAGAAAAACATATCCTTGGG
Band lengths:
182-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]