RnoINT0044558 @ rn6
Intron Retention
Gene
ENSRNOG00000062306 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:RGD Symbol;Acc:1561655]
Coordinates
chr7:14536835-14537842:+
Coord C1 exon
chr7:14536835-14536979
Coord A exon
chr7:14536980-14537788
Coord C2 exon
chr7:14537789-14537842
Length
809 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
ATTGTCCTTGCTCACGGCAGCTG
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTCAAGAACAATGAAGAAGGCCTGCAGTTGTTGGCTGAAATGAGCCACCAGTTCCAGGATATCCACCTCTGTTGGATTGGGATCTTCTACCCCATCCTGAGGCTTATCCACCCCAAGTTTATTGGCCCCATACTCCAGGCCCCAG
Seq A exon
GTAGTTCTCCAAGGATCACTGTCTGTTCCCTTCCTTTTCTCCCAGCTCTCCCTATCCCTGCCGCTGCCACTAACCTGACTGACCTTGGACAAAGACTGTTCAATGTGAACGGTGGAAACTCAACCTGGTATGGTCTTAGCGAAGAAAAAGAAATCTACTGGTGTGGGGTATAGCTTTGTGGTGAGGCATTTGTCTGCCGCATACAAGGCTACATTTCTGGGCTCTGAAAAAAAAATTAAAGAAATCTGCAGGCAGAAAAATCCAGGGAGAAGATTCTTCAAGCACAGCTGGAGTCAGTCTGGAAAATGCTGCTGGAGTCATTGTCTTGTTTCCGCCCTCCTCTTCGATGGCTTCACTGTCACGTAGGGAAATTCCCTCTGGCTCTAGTCCTCTCTGACCTTTGCCTCGTTTGGGTGGTAGGACAGATTCTTCATCCACCACGGTGACTTGATTGTCTCCTAATATTTTCGACATAGAATGACAAACAACCAGTACATAAAATCAGAATTCAGTCTTAAACAGAAGCAAAGTAAAAAGGACACATGTGTCTTCATAGCTCCTTCTTAAGTGAAAGCAAAGGCTAGAAGATGGAAGTCATTTGTGTACTTAAGATACGGTCTTTATTTTGTGATCCTTGGCAAAACATCTCTGGTAATGAACTAGGACAAAAATGTGGAGATCTGCTGGGTGTAGCGTGTGCTCCCTTAAAGCTAGCAGTACAGAGGCAGAGGCAGGTAGATTTCCGTGCACTCGAGGCCAGCTTCTTCTTTCACCTCTCTATGACCCCTGATTGTCCTTGCTCACGGCAG
Seq C2 exon
CTGCGGTGGCTCCTAAGGAAATGATTTTCTATGGCTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062306:ENSRNOT00000060284:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGAAGAAGGCCTGCAGT
R:
CTTCAGGAAGCCATAGAAAATCAT
Band lengths:
182-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]