BtaINT0046331 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99692120-99693486:-
Coord C1 exon
chr3:99693345-99693486
Coord A exon
chr3:99692165-99693344
Coord C2 exon
chr3:99692120-99692164
Length
1180 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCTCTGCTTGACTCTGCAGATC
3' ss Score
10.63
Exon sequences
Seq C1 exon
TTATTTAAAGATGGTAAAATGGAGATCCTTGAGAAGATTGTAGAAAAATACCCTTGTGCCTTTCCTCGCTGGATTGGGCCCTTTCAGGCATTTTTATATATCTATGATCCAGACTATGCAAAGACATTTCTGAGCAGAACAG
Seq A exon
GTAAGAAAAGAGATGACTCTCAGGGTCCTAATCCTCCTAGGAGTGATATGACACAACCCACAGGCAGGCTTCTAAAGGAATTCTGAAGCAAAGATTGGTATTGGGCCTTTAAGAGACACTGGCGGAAGTGTGGAGAGGTTTCCCACCAATCCTGAAGGGGATTCCCACGTCCCCCTAGTCCCTTGTCTTGTTCAGACTTCCCTGGACTGTTTTAGGGCAGTGTATCTTAAAGCCTAGAAGGTACCATTGGATCTCCAGGGCCTTCCTTTCCTCTCTTGGTTTTGTGACTTCAGCATCAGTAATACTCCCCACCTCAGCCCATTTCTTGAGTATAAAGTCTTCAGGAGAAATGTTCCCAGGGTAGATTATCTCATACCACAAAATTCAAATGTCCAGTTTTTGCTCTCCCAACTTTGTAAAGCTAATGATAGGCTCAACTTCTTTGTGCTATTACCTCCCTCGCATGCATGCATGTGCTAAGTCGCTTCAGTCGTGCCCGACTCTTTGTGACCCCATGGACTGTAGCCTGCCAGGCTCCTCTGTCCACAGGATTCTCCAGGAAAGAATACTAGAGTGGGTTGCCATGTTCTTCTCCAGGGGATCTTCCCGACCCAGGGATTGAATCCACGTCTCTTAAGTCTCCTGCATTGCCAAGTGTGTTCTTTACCACTAGCACCACCTGGGAAGCCCCATCACCTCCCTTACTCTTAGTAAAACCTTATAAAGGCAGCCTTTCCCTGAAAGCCCCTGTGTCTCCCAGTCCCAGAGCTCTGATTTGTCTCATATTCATCTTGTAAAGGACAAGAGCTGTGAAACACCCTCATGCTAGAATTCCTGAAAGGGTTCTGCAGGTCCCGGCTCTAATAGTTAATTTGCTTTCCAAAGAAGATGTGATATATTGTCCCAACTCCTGTCCTGGACACTTTGCAACCTTTGGGCAATCTGTTTCTGCTGGAGGAAGTGGAAACAAGGAAAGAATCTGGATTTGTGTACCTGTCTGCCTCCTGGAGCTGCTGTTGTCAGCTTCCTGAGCCAAGACAGCCAAGGGCTGTAGGGAGTGAGCCCCGGGCTCCCTTTTGCTCACTGTTTGTGTTTAGTTTCGGCAAATGAAGAGAACCTTCCCCAACTTTGGTGATTTTCCTCTAATGTTGTCTTTTGTTTCCTCTGCTTGACTCTGCAG
Seq C2 exon
ATCCCAAGTCCAACTTCCTGTATAAGTTCATGACTGCAAGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647:ENSBTAT00000020783:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(9.4=97.6)
A:
NA
C2:
PF0006717=p450=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGATGGTAAAATGGAGATCCTTG
R:
CAACGCTTGCAGTCATGAACT
Band lengths:
182-1362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]