GgaINT0039929 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:22595023-22595899:+
Coord C1 exon
chr8:22595023-22595167
Coord A exon
chr8:22595168-22595854
Coord C2 exon
chr8:22595855-22595899
Length
687 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTCCCCTCTTTCTTTTACAGATC
3' ss Score
14.18
Exon sequences
Seq C1 exon
TTTCTCAAAGAAGAAGATGTGCTGGAAAAGGCAGAGGCATGGGCACTGAAGTACCAACATGCCCACCCTATCTGGTTTGGGGGTTTCTCGGCAGTCCTGGTGATCAACGATCCTGAATATGCCAAAGCCCTTTTTGCCAGAGGAG
Seq A exon
GTAAGAGGCGATGGTTCAGCTGTGGAGCAGCAGCCCCAGACTGCAGCTTTCCCAAGCTAGGATGGCAATTCTCAGCAAGGCAGGGTGTCACAAATAGGTTGTATTACAGAAATCAATGTTGGGTTGTTTTACAGAGAGAGCTGGCTGCCATGTACTCCAGGCATGCAGCTGCATACCCCACTGAGGGCTGCAAGGGACCAGGGGTCCTCAAAATCTACTAACAGATCTATCTTCCTTGAGTCCTCCTTGAAAAGCTCCCTTCTCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTACCCTACAACATGCCCGTTCAACTTTGGACTACCCCTTTTTTTGTTTACTCCAGTCTGAGCATCTGCGTTTATACACTTTCTCACAATTGGACCTAACAGTATTGTTTTACCATGAAACAGTGGTCAGTTGGCCCAACAGTATTGTTTTACCATGAAATAGTGGTCAGTTCTGCAAGGATGCCACTAGTTCAGTTTCACACCCTACAGAAAGCAATACCCCAGGGTGAGCTTTCAGGTGCCAACCAGTGGAGTGATGCTGGTGAAATGTTTTCTGTTTCCTTCTCTTTCTTTTTTTCCCCTCTTTCTTTTACAG
Seq C2 exon
ATCCCAAGGATAACCTCAGCTATAAGCACCTTATCCCATGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(26.8=100)
A:
NA
C2:
PF0006717=p450=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCAAAGAAGAAGATGTGCTGGA
R:
CAATCCATGGGATAAGGTGCT
Band lengths:
190-877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]