RnoINT0044536 @ rn6
Intron Retention
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134519822-134520197:-
Coord C1 exon
chr5:134520056-134520197
Coord A exon
chr5:134519867-134520055
Coord C2 exon
chr5:134519822-134519866
Length
189 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GATGTCCCCTTGTCCTACAGATC
3' ss Score
10.85
Exon sequences
Seq C1 exon
ATCCAGAAGTTAGGGAGCCTGGACAAGGTGGTATCCTGGGCCCAACAGTTCCCCCATGCCCACCCACTTTGGTTTGGACAATTCGTTGGTTTCCTGAACATCTATGAGCCCGACTATGCGAAAGCTGTATACAGCCGCGGGG
Seq A exon
GTAAGGTGCACTGGAAAGAGGGTGGGGTTTCCTGAGATTAGTGGCCCCCGGGACCAAGTTGGGAGAGGTCAGGGCATGTGTCTAAACTCTGGGAAGAGAATGACCACATCTCTACACTGTGGGATTCATCACTATGCCTCATTTGAGAATGCCTTATTTCTTTTTGACTGATGTCCCCTTGTCCTACAG
Seq C2 exon
ATCCGAAGGCTGCAGATGTGTATGACTTCTTCCTCCAGTGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078:ENSRNOT00000013321:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGTTAGGGAGCCTGG
R:
CGATCCACTGGAGGAAGAAGT
Band lengths:
186-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]