HsaINT0044445 @ hg38
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46810808-46811184:+
Coord C1 exon
chr1:46810808-46810949
Coord A exon
chr1:46810950-46811139
Coord C2 exon
chr1:46811140-46811184
Length
190 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
CTGATTGTCTCCTCCTGCAGACC
3' ss Score
10.96
Exon sequences
Seq C1 exon
ATCCAGGAGACGGGGAGCCTGGACAAAGTGGTGTCCTGGGCCCACCAGTTCCCGTATGCCCACCCACTCTGGTTCGGACAGTTCATTGGCTTCCTGAACATCTATGAGCCTGACTATGCCAAAGCTGTGTACAGCCGTGGGG
Seq A exon
GTGAGGAGAGAGGATGGGGATCTCAGGAGAGGGTGGGGCTTCCTGAGAACAAAGGGCTCAGGGCATGATATGGGGAGGAAGCCTGGGCCTGTGTACTAAGTCTGCGGAGCTGAGGTTCCCACCCTACTCATAAATGAGCCTCCTCTAGGAACCCCGGGTCCCTGCTTGACCTGATTGTCTCCTCCTGCAG
Seq C2 exon
ACCCTAAGGCCCCTGATGTGTATGACTTCTTCCTCCAGTGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973:ENST00000271153:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGGAGACGGGGAGC
R:
CAATCCACTGGAGGAAGAAGTCA
Band lengths:
187-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development