HsaINT0044445 @ hg19
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450, family 4, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:2644]
Coordinates
chr1:47276480-47276856:+
Coord C1 exon
chr1:47276480-47276621
Coord A exon
chr1:47276622-47276811
Coord C2 exon
chr1:47276812-47276856
Length
190 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
CTGATTGTCTCCTCCTGCAGACC
3' ss Score
10.96
Exon sequences
Seq C1 exon
ATCCAGGAGACGGGGAGCCTGGACAAAGTGGTGTCCTGGGCCCACCAGTTCCCGTATGCCCACCCACTCTGGTTCGGACAGTTCATTGGCTTCCTGAACATCTATGAGCCTGACTATGCCAAAGCTGTGTACAGCCGTGGGG
Seq A exon
GTGAGGAGAGAGGATGGGGATCTCAGGAGAGGGTGGGGCTTCCTGAGAACAAAGGGCTCAGGGCATGATATGGGGAGGAAGCCTGGGCCTGTGTACTAAGTCTGCGGAGCTGAGGTTCCCACCCTACTCATAAATGAGCCTCCTCTAGGAACCCCGGGTCCCTGCTTGACCTGATTGTCTCCTCCTGCAG
Seq C2 exon
ACCCTAAGGCCCCTGATGTGTATGACTTCTTCCTCCAGTGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973-CYP4B1:NM_001099772:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGGAGACGGGGAGC
R:
CAATCCACTGGAGGAAGAAGTCA
Band lengths:
187-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)