GgaINT0035770 @ galGal3
Intron Retention
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22606645-22608505:+
Coord C1 exon
chr8:22606645-22606786
Coord A exon
chr8:22606787-22608460
Coord C2 exon
chr8:22608461-22608505
Length
1674 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
GCCTTTATTTTGTTTTACAGATC
3' ss Score
12.12
Exon sequences
Seq C1 exon
ATAACTGGTGACAAAGTATTGAATCTATTAGTGTCACTGGGAGAAGAATACCCATATGCCTTTCCCAGATGGTTTGGACCAGTGCTGCCATCTCTAGTAGTCCACCATCCTGAATATGCCAAGACTATACTTGGACGAGGAG
Seq A exon
GTAATTCTCTTCTCTTGGGTTTGGGGATTACAGTCCTTCACTCTTCCCTGGGAAGCATGTCCTTCTACAGCATCAGCCACCACGATATTTGTGCTTCCTACTAAATGCAGTAATGTGTGTGACCTGGCAGAGCGATGGCTCTCAGAAGACAACTCAAGATTTTCTCTCTGCTCCTTTTTGTGGAGTTGTTTGTGCTTGGTGGATTCCCAAGGACTTACGTTCATTCTTCTCAGCTTTGAGATTTGTCATGGTTGTTTATTTTCCACACATATTTTTCCCGTGTTCACTGAGGCCATAGATGTAGAAGATCACATTTAAACTTCACCTCTAGTGTTAAAGTATTTTACACATGGAAACAAGACTAATTCTATAAGGGCAGCTCCAAAAGTAATGCCTCCTATTTTATTACGTTGGCCCATACCATCAGAAGAGGATGTTCGTGGTATGGCAGTATATGCTGAACCTTCCCACCAATATTCCATTACATTTTGTCGCCGTGCAACAGATGGCAGTAGAGAGGCAGCATGACAAAATCGAGTTTGACACCTGCTGACATTCATTGATGCTTGCTGAATGTTTGTGGAGAACAGTGGATGTGAGCACAGTGAGGTGGGTGGTGCATTTCAGCAGCGGTGACAGCAGTGTGAAAGACAAGCCACATTCTGGATGGCCAGCACAGCTGTCAGTCCATGACATTAAGACTGTCTCAATCAGTTCATCTCTGGATTGCAACCAGGGAGCTGCATACAGAGCTGAATATTAGCTTCAATGCATTGGAAACTGTGGTGGAAATGTTGGAATATTACAGAGTTTACACCATGTTGATCCCACGAGTGCTTACACAGGAACAGAAAGAACACCACATGCAAGTTTGTCAGGACCTATTGAACAAAAAAAGGAGGCTGAAGGTGATAGTTTTCTGGATCACGTCACTACCACTGACAAGACATGGTGTCACAACTATGAGCCCAAGTCACTACAGCAGTCCATGGAGTGGCAAGTGGCACCATGTGAATTCCCCATCAAAGAAAATGTTCAAGATGCAACCCTCAGCGCATACAGTGATGTGCACTGTCCTCTGCAACAGGAAAGGGGAGATCCTTCTGGTTTTCCTGGAACACAAACAACTCATCAGCTCTGACTGCTTTATCATGACACTATGCTGAATGTTTGAACTTTGAGAAGAAGACAACCTTTCTCTTGTAACACTATAGTATCAGGCCATGTGCCGGTTTGAAGAGTGTGGGGTACATTGCCAGTCTTGGCAGGCATTCCTCCCACACCAACTGTGTAGTCCAGATTTGGTACCTTCTGACTTCCATCTGTTCTGGCTGATGAAAAGCAATAATGCCATCCTAGCAGCTGTGAAACAGTGGGTCACCTCCATTTTACAGGCTTCTTGTTCATTGTTGGCAAAAATGCACAGTTAATGGTGGTGACAGAGTTGAAAGAATAGTGATTTGTACCTGAGAATTTGCTCTATCAAATAGTGTTACTGTGCTCTTTGTAGCTATTATAGTTTCCCTGGAAATAAATAGGAGGCATTACTTCTGGAGCGACCTACGTACACTGTGATAAAGAGGAGGGATTCTACTGGCAATTTATCCTGAATTTTCTTGATACATTGCGTTCATTAGCCACTTATACTGTTCTGGCCTTTATTTTGTTTTACAG
Seq C2 exon
ATCCCAAGCCTCCTGTACCTTATCAGTTCTTAGTTCCATGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NA
C2:
PF0006717=p450=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]