BtaINT0046281 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011976 | CYP4B1
Description
Bos taurus cytochrome P450, family 4, subfamily B, polypeptide 1 (CYP4B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076202]
Coordinates
chr3:99944743-99945110:-
Coord C1 exon
chr3:99944969-99945110
Coord A exon
chr3:99944788-99944968
Coord C2 exon
chr3:99944743-99944787
Length
181 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AGCTTCTCTTTCTCTTATAGACC
3' ss Score
10.18
Exon sequences
Seq C1 exon
ATCCAGCAGACTGGGAGTTTGGACAAGGTGGTGTCCTGGACTCACGAGTTCCCTTACGCCCACCAACTCTGGGTTGGACAATTTCTTGGCTTCCTGAACATCTATGATCCTGACTATGCCAAAGCTGTGTACAGTCGAGGAG
Seq A exon
GTGAGGACTCCTGGAAGAAGTTGGAGCTTCCTGAGAGCAGAGGGCTCAGGGTGCCATGTGGGGAGGGGTCCTGGGCCTGCACCCTAAGTCTGGGCAGGTGAAGTCCTCACCTTATTCATCACCAAACATCCTCCAGGAATCCCCCAGTCCCTGTTTGACCAAGCTTCTCTTTCTCTTATAG
Seq C2 exon
ACCCTAAGGCCCCAGATTTCTATGACTTCTTCCTCCAGTGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011976:ENSBTAT00000015892:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGACTGGGAGTTTGGAC
R:
TCCACTGGAGGAAGAAGTCAT
Band lengths:
181-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]