BtaINT0046891 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25046952-25047878:-
Coord C1 exon
chr2:25047795-25047878
Coord A exon
chr2:25047108-25047794
Coord C2 exon
chr2:25046952-25047107
Length
687 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TTTGTCTTCTGTTCCCTAAGACT
3' ss Score
5.98
Exon sequences
Seq C1 exon
AATGAAAACCTACCCACTGTTACAGCTTCTGGACGGGTGGTAAAAAGAAGTTTTACCATTCTGGATGATGACCCAGAACAAGAG
Seq A exon
GTATGACTTGCAGTTCAGTTCAGTTCAGTTTAGTCGCTCAGTCATGTCTGACTCTTTGCGACCCCCTGAATTGCAGCACACCGGGCCTCCTTGTCCATCACCAACTCCCGGAGTTCACCCAAACCCATGTCCATCGAGTCGGTATGACTTTAACCAGAAATAATAAACCAAACTAGCATGAACTTGCCCTGGGATAGAGGTCAGGAAGCTCCATGCAACCTTAGTCAGTAGAATTGTACAAGCTGTTTGAACCAGGGCACCCCCATCATCCTCTCCTTTCATACTGAAATTATTCATGAGATTTTGCTTGTAGAAGTGTTCATAGGACCAAAATAATTTGAAAAAACAATTATTAGTTTATTTTTTTGTTGTGTTGATGTGTACGCTTCCTAGGGAAATCTCTTCTAAGAAAATTATTGAGTTATATTCTGATGATTGTGACTTTTGCCTTATGTTTCACTTGCTAGACTTAGATGTGTTTGTCAGTGTTCATGGCCCAGAAGAAGAAGGTGCGAGGGTGTGGTAAATCAGCTCAGCCTTTGGAGATACATTTCTGCCTATGCTCCCACCCATTCTTTTTCTTTCTACATAGTTTTATAATGTTAGAATAGTTAAGCCACAACTGTAGAAATAATCAAAACTGGATTTTGCCCCTCTTTTATTTTACTTTGTCTTCTGTTCCCTAAG
Seq C2 exon
ACTTTCAAAATTGTCGACTATGAAGATGAGTTGGATTTGCTTTCTGTGGTAGCTGTTACTCAAATAGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTGTAATGAATATGGAACTTTACTTAAAAGTATTCCACTCATGGAGTCATGGGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683:ENSBTAT00000010105:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTACCCACTGTTACAGCT
R:
AAAGTTCCATATTCATTACAGTGGAA
Band lengths:
198-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]