RnoINT0045216 @ rn6
Intron Retention
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57670492-57671923:+
Coord C1 exon
chr3:57670492-57670575
Coord A exon
chr3:57670576-57671767
Coord C2 exon
chr3:57671768-57671923
Length
1192 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTC
5' ss Score
6.35
3' ss Seq
TACTTTCATCTGTCCCCCAGACT
3' ss Score
7.99
Exon sequences
Seq C1 exon
AAGGAAAACTTAATCACGGTTACAGCTTCTGGACGTGTGGTGAAACGAAATGTCAACCTTCTGGATGATGACCCAGAACAGGAG
Seq A exon
GTATTCCTTAGCCAACGATAATCAATCCAACAGTCCACTTCTGTTCAATTAATGCTTCCCAGCTCCCCACCCCCAGACAGACTTGGAGTCAGGGACCCCTGCAGCAGGATGGGGGTGGGTGTGTGGGGTCCAGTCAGTGCCACCCCTCTCCTGTTGCCTTACTGCAGTCTTTTACGTGGTTTTATTTGTAGTAAAGTTTATGGGGCCAAAATAACTTGAAAACATGATTAGCTTATTGTTTTGTAAGATGTACATTTTGTTTGGTTGGTTTGGTTTTTTTTTCAAAACAGAGTTTCTCTATAGAGTCTTGGCTATCCTGGAACTCAATTTGTAGACCAGTCTGGCCATCTGCCTCTGCTGGATTAAAGGGGTGCACTACCATTGCATGTGAGAGCACATGCAAACACATATACATACATATACACACATACTATTTTTAAAGATAAATCGGGTTTTTTTTGTTTTTTTTTTTGTTTTGTTTTGTTTTAAAGATTTTATTTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCCGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACGACCTCTGGAAGAGCAGTTGGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAGATAAATCGTTTTTAAGAAGCAAATTCTTCATGGTCGAGCAGTAGAGTGCTTGCATGGCAAGCATGAGCTCCTGGTTCAAATCCCTGCAGAAGCAAAAGGAAAACAGAACAGAGCTAAACAAAAACTGGCAACTCTAAGTTGAGGTTGCGCTGGCAGTTCTTTTGGGTGGAGAGGTGGCTTTCCAGTTAAGAACACATGTTGTTTGAGTTTCAGAGTTTGAGTCCCAGCACCCATGTAGCAACAAACTGGCCATGTAGGCAAAGGCCTGTAACTCCAACCCCAAGGGATGCAGTGTTCTTTCTGGTTGTTTGCCAAGACTATAGGATACTGCTTAACACGTGGAGATCTGGAGAGCCACCCATATTTTATGTGTATACACAGTGATACATTTCTACTGATTCTCTCATTTATTTGTTCGTCCTTCTGTTGTGTTTTCATAAGTGATAGAATAATTCAGTTTAAAATGTAGGAATAGTTCTTGCTTATTAACTAGAATTGACACTACTTTCATCTGTCCCCCAG
Seq C2 exon
ACTTTCAAAGTCGTGGACTATGAAGATGAGTTGAACTTGCTTTCCGTAGTGGCTGTCACTCAAATAGATGCAGAAGGGAAAGCTCACCTGGATTTCCACTGTAACGAGTATGGAACCTTACTCAAAAGCATCCCACTAGTGGAGTCATGGGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403:ENSRNOT00000031463:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAACTTAATCACGGTTACAGCT
R:
CACATCCCATGACTCCACTAGTG
Band lengths:
239-1431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]