BtaINT0047968 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039014 | DEF8
Description
differentially expressed in FDCP 8 homolog [Source:RefSeq peptide;Acc:NP_001092427]
Coordinates
chr18:14785177-14786453:+
Coord C1 exon
chr18:14785177-14785219
Coord A exon
chr18:14785220-14786312
Coord C2 exon
chr18:14786313-14786453
Length
1093 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
TCACATGGCTGTGCCTGCAGCTC
3' ss Score
6.79
Exon sequences
Seq C1 exon
ACTGACCTGCAGGAGCAGGCGCGCTGCCATGGCCTCCCTGCAG
Seq A exon
GTGATAAAATATGGCTTCATGAGCAAGATATCCTGGCGCAGCTTCTGTGGACAAGAGGGGCAGGTGGGCATCTCTGGCCAGAGCAGGGGCTGTGCTGGGCATGTCTGCATGGCCAGTGGGGGTGAGGCAGGGCTGGCTTTGTGGGAAGCTTTGTCACTTTACAGTCTGGGTCAGTAGAGGACCGTAAGTGCATTCCCGTCCCCCCACAACAGTCCCAGCTTTGAGGCCTCCAACCGAGCTCAAGGTCAAGACACAGTTTCCCCACCAGGCAGGACCCTAAGCTTCCATAGTGCACAGTTGCTCCCCGCCCAGCTCCACATGCACACACACACACCTTGGGAGCGCCTGAGCTTGCATCAGACTGCCCAGTTGAACCCAGATCCCCTGCTCAGCTCAGTGGCCCTGTGCCTCAGCTCCTCCCCACCAAGTCCCATCCCTCTCCGCACCCACCTGAGGCACACCCCACCCCGCCCTCCTGCTGAGTGCCAAAGAGAGGACCCCCAGTCACACACAGCTCCTCAGAACAGCGACCAGATGTGGCTGGGCCAATGTGAGGCTGCTCTTGACAATACACACTGGGACGCAGTCTAATACAAGACAGAAACGCCACACGATGTGTCTCAACAATGTGCACGAAATAAAAGACATCACTGAGATGAACTTCACCTCATTTTTCTACTGTGGTTGCTACAAAATTTCAAACTGCCTCTGAGCCTCGTGTGCTATTTCGTCGTATTGTGACTGGACAGTTGCTCTAGCGACTTTAACTTAAAAGGCAGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCGATGGTGTTCTGGATCCTGGGGAGCAGAGTGGGCGGGACCTGGCCCTCACCTAGGAGTGCACTCTCCGGGTTGGGCCGGCAGGAAGAGTAGGAAGCAGCGTATTGTGTGATGATATGTGTGGACAAGATAAAGCTGGGAAGAGGGCTCTGGTCAGGCAAGGGCCCTGGCCTGGTGGCTCCGGGGTCACATGGCTGTGCCTGCAG
Seq C2 exon
CTCCAGGACCGGCAGCACTTTGTGGAGAACGATGAGATGTACTCGGTGCAGGACCTGCTGGACACGCACACGGGCCGGCTGGGCTGCTCACTGGCTGAGACCCACACGCTGTTTGCCAAGCACATCAAACTGGACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039014:ENSBTAT00000004669:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(6.9=100)
A:
NA
C2:
PF139011=DUF4206=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development