GgaINT1011121 @ galGal4
Intron Retention
Gene
ENSGALG00000025712 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:25969]
Coordinates
chr11:18295400-18295695:+
Coord C1 exon
chr11:18295400-18295480
Coord A exon
chr11:18295481-18295554
Coord C2 exon
chr11:18295555-18295695
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
ACATCTGCCTGCCCGTGCAGCTG
3' ss Score
9.4
Exon sequences
Seq C1 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCATACTTTATCACCTGCAAAGAGGCAATGGAAGCACGGCTGCTGCTGCAG
Seq A exon
GTCAGGCCCGGTGGCGGGCAGGGGGGAGGCCCTGGGTACGTGGGCACAGCAGTGACATCTGCCTGCCCGTGCAG
Seq C2 exon
CTGCAGGACCGACAGCACTTTGTAGAGAACGACGAGATGTACTCGCTGCAGGACCTCATTGACATCGAGGCCGGGCGCCTGAGCTGCTCCCTGACTGAGATCCACACCCTCTTTGCCAAGCACATTAAGTTGGACTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025712:ENSGALT00000044355:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTGCAAAGAGGCAATGG
R:
AATGTGCTTGGCAAAGAGGGT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]