RnoINT0046335 @ rn6
Intron Retention
Gene
ENSRNOG00000000264 | Def8
Description
differentially expressed in FDCP 8 homolog [Source:RGD Symbol;Acc:1309008]
Coordinates
chr19:56254382-56255608:+
Coord C1 exon
chr19:56254382-56254462
Coord A exon
chr19:56254463-56255467
Coord C2 exon
chr19:56255468-56255608
Length
1005 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
CACCTGCTGGGTCCTCGCAGCTA
3' ss Score
6.4
Exon sequences
Seq C1 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCATACTTTATCACCTGCAAGGAGGCCATGGAGGCACGACTGCTGCTGCAG
Seq A exon
GTCAGACTGCTAGAAGGACCTGTCTCAGGTGGCCAGGGTGACGGAGCACTTCATGCTCAGATTCCTCAGATAACCCTGTAGCTCTAGATACATTGTACTTCTAGTAGCCTTTTGAACGCTCTCTTCTGGGGATGTTACATCTGTAATAAACTGGCAGACATTTTACACAACAGCAGTATTCTCTGAGGAGCTTGGTTTTTCCAAACTAAAGATAAATAATTACCATGTTTAGCCTTAGGTAAATGGCCTTGAGTTTAGCCTCCTCTAGCAGGTTGAACAAAATGCAAGGTTTTTTTTGTTTGTTTTTTTTGAGACAGGGTTTCTTTGTGTAGCCCTGGCTATCCTGGGACTCACCCTGTAGATCAGGTTGGCCTCAAACTCACAGAGATCACCTGCTTCTGCCTCCTAAGTGCTGGGATTAAAGGTGTGCACTCAGGCACGCACGGCACGCGTGCACGCACGTACGTACGTACCACCATGCCTGGCCAAAATACAAGCTTTAAGACTCACTGCTTTGATCAATAAGTGATCTCAGACGCTGGCCTAAGTTTATGGGGAACAGTGAGCAAAACAGGCTCTTGGAGAGTGGCCAGTGGTCCAGGAAGGCAAGGGAAATAGGCAGTATGTCACGGTGTGACTGCTGTGTACAGAAGGAAGCAGGGCAAGGGGTGCGTACAACCAGAAGGTTTTAAACAGACCAGAAGGAGGCAGGATGGCAGGGGGAAGTCATGGAGAAAGGTTGGGAGCACTGACCCACTGTGGCTCTAGGGGCATCGCAGGTGTGTGAAATGGGGTACGGGGCATATAGATTAGGAAATGTTATCTTGGCCATATCTTGCCCCTAGCTTCTCCAGAATCTGGAGGTCCCTAAATGGACACCCTATGTAACTTGGTGGGTTCCACGAGAACCCTGGGCCCTGACAACAGGAGTGGCCGCGGGTGGCAAGTCGGGGGGGGGGGGGACCTTGCTCTGCATTGGTGGTAACACCTGCTGGGTCCTCGCAG
Seq C2 exon
CTACAAGACCGACAGCATTTTGTGGAGAACGATGAGATGTACTCCATCCAGGACCTCTTGGAGGTGCACATGGGCCGACTCAGCTGCTCGCTAACTGAGATCCACACGATCTTCGCCAAGCACATCAAACTAGACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000264:ENSRNOT00000000281:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(12.7=100)
A:
NA
C2:
PF139011=DUF4206=FE(22.4=100),PF144461=Prok-RING_1=PU(6.5=8.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGCGCCAGGACATC
R:
CTCACAGTCTAGTTTGATGTGCT
Band lengths:
222-1227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]