BtaINT0048042 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19228498-19228877:+
Coord C1 exon
chr7:19228498-19228605
Coord A exon
chr7:19228606-19228797
Coord C2 exon
chr7:19228798-19228877
Length
192 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCCAAATGTGTCCTTTGCAGAAT
3' ss Score
9.67
Exon sequences
Seq C1 exon
GAAGGGGACTCTGGCCTGCAGAGGGGGGGCTCCTTGAGGGCCCCTTCCCTCACCAGCCGCTCAGATCGCCTGCAGCAGCGCCTGCCTATCACCCAGCACTTTGGACAG
Seq A exon
GTAAGCCCCGTCCCACCTAGTGCCAATGCACACACCTGGAATTATCACCACATCCTTCTCTCCTTCCCTGCCTCCAACCAGACATCTCAACTACCCCAAAATGGGGTGCCCACACCATCCCCCATTCACAGAGCCCCCCAATTCTGTAGCTCCTGAGGCCCTGCCCCCAGCCCCCAAATGTGTCCTTTGCAG
Seq C2 exon
AATCGGCCCCTTCGCCCTAGGAGTCGCCCCAGCAGGAGACTTAGGCTGGAAGAGAAACCTTCTGAGTCCCTGGAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGACTCTGGCCTGC
R:
CTCTTCCAGGGACTCAGAAGGT
Band lengths:
186-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]