RnoINT0046450 @ rn6
Intron Retention
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9980337-9981352:+
Coord C1 exon
chr9:9980337-9980378
Coord A exon
chr9:9980379-9981284
Coord C2 exon
chr9:9981285-9981352
Length
906 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGAG
5' ss Score
-0.41
3' ss Seq
TGCTCTCTGATCTTTTTCAGAAC
3' ss Score
10.58
Exon sequences
Seq C1 exon
CTGCAACAGCGCCTGCCTATCCAGCGCCACCACTTCGGACAG
Seq A exon
GTCGAGGCTGCCCACTGTCCCAACCACCACAGCATTCACACGAACACCACACCACAACACAGAAATGCCTGCCTCACCATCACACCAAACACACAACACACACACACACAACACACACACACACACTACAGAATGCGCTGCCTCCCCTCACAGCAAACACCACACCACACCCACAACACCCACCTACACAGCGAGGATGCCTGCCTCCCATCAACCACAGCCACACACACACACACACCACACACACAGAATGCCTGCCTCCCATCAACACAAACAACACACACACACACACACACCCACACAACAACAGAGGATGCCTGCTCCCCAATCACACACCAACGGCGCACACAGCACCACACACACACACACCCCACAACACACACACCACACAGAGTGAGGATGCTCACCTTCCCCCATACATACCAGATTCTTCCCAAATCCTGCATTTGTCCCTAGCGTTCACCAAACCATCTTCCTGTGTTGAAGTTCAGATTATAGTTCACTCACTAACAGTCAAGGGTGGGTTTGAACCCCTGATCCACCACACCCAGTTTAAATAGTGCTAGGGACCAAACCCAGTGCACTGTGCATGCTAGGCAAGACCTGTACCACCCAAGTTACATTCTCCCAACCCCTTGGTTGGGAGCTGTTTTTAGTTTTTTAGACCAAACTTGTCTAGAACCCAGAGATCCACCCCAGCCCTTGTTTTGTTTTTAGAAGAATCTCACTATATAGCCAGCCAGAACTTGAACTGGAAATGATCCTCCTGCCTCAGGCTCAAATGCAGAGATGACAGACATGCAGTATCATGTCCAATGCTCTTTCCAATTCAAGATGGAAAGCCCCAGCCATGGATTCAACAGCTCTGGAGGCTTCTCCCATCTCTTGCTCTCTGATCTTTTTCAG
Seq C2 exon
AACAGGCCCCTCCGTCCTAGCAGGAGACTCAAGCCGGAAGGGGGACCTTCTGAACCCCTGCAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050:ENSRNOT00000075215:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]