BtaINT0048047 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19222601-19222872:+
Coord C1 exon
chr7:19222601-19222720
Coord A exon
chr7:19222721-19222802
Coord C2 exon
chr7:19222803-19222872
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
ATTGTGTCCACTCTCCATAGCCA
3' ss Score
7.68
Exon sequences
Seq C1 exon
GGAGACCCCCAGCACCGCTGTACAGCATTTCACCTTCGTGCTCACAGATCTGACCGGCACCCGCAGGTTTGGTTTCTGCCGCCTGCGGGCTGGTGCTCTCAGCTGTCTCTGTATCCTCAG
Seq A exon
GTGTGGGAGCTGGGGGTCTGGGGGTGGGGGTTGGGGACTCTGCCCAGGGGCACTCCATGGAAATTGTGTCCACTCTCCATAG
Seq C2 exon
CCACCTGCCTTGGTTTGAGGTGTTCTACAAGCTGCTGAACACAGTGGGGGACCTCCTGGCTCAAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(3.9=19.5)
A:
NA
C2:
PF0214116=DENN=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATTTCACCTTCGTGCT
R:
TTGGTCTTGAGCCAGGAGGTC
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]