BtaINT0048051 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19223389-19223665:+
Coord C1 exon
chr7:19223389-19223442
Coord A exon
chr7:19223443-19223554
Coord C2 exon
chr7:19223555-19223665
Length
112 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
CGTCTCTCTCTGTTCTTCAGAGG
3' ss Score
8.94
Exon sequences
Seq C1 exon
CTTTCCTGCTTCGTGGCTCCCGACTCCAGCCGCCTGCCATCCATTCCTGAGAAC
Seq A exon
GTGAGTGGAGACCCCGGGAGGGAGCTCTGGGGGAGGGTAGAGGTCCAGAAACCAGGAGGGGGCTGTGAGATCCTGTGGTCCCTCGTGTCCAGCGTCTCTCTCTGTTCTTCAG
Seq C2 exon
AGGAACCTAACGGAGCTGGTGGTGGCGGTGACCGACGAGAACATCGTGGGACTGTTCGCCGCCCTCCTAGCAGAGCGAAGGGTCCTGCTCACGTCTAGCAAACTGAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809:ENSBTAT00000045088:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.4=100)
A:
NA
C2:
PF0214116=DENN=FE(17.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCTGCTTCGTGGCTCC
R:
TGTGCTCAGTTTGCTAGACGT
Band lengths:
165-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]