HsaINT0046736 @ hg38
Intron Retention
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6476857-6477127:-
Coord C1 exon
chr19:6477074-6477127
Coord A exon
chr19:6476968-6477073
Coord C2 exon
chr19:6476857-6476967
Length
106 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
AGCGACTCTCTGATCCTCAGAGG
3' ss Score
4.44
Exon sequences
Seq C1 exon
CTTTCCTGCTTCGTGGCCCCGGACTCCGGCCGCCTGCCATCCATCCCTGAGAAC
Seq A exon
GTGAGTGGGGAGGGGTCTCTGGGGGTGAGAACAGGTCCCGAAACCCGGACCGGGGATGCAAGATCCAGGGGCCCGTCCACGCCCAGAGCGACTCTCTGATCCTCAG
Seq C2 exon
AGGAACCTAACGGAGCTGGTGGTGGCCGTGACTGACGAGAACATCGTGGGGCTGTTCGCGGCGCTCCTGGCCGAGAGAAGAGTCCTGCTCACCGCCAGCAAACTCAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744:ENST00000381480:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.3=100)
A:
NA
C2:
PF0214116=DENN=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCTGCTTCGTGGCCC
R:
GCTGAGTTTGCTGGCGGT
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development