BtaINT0049272 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147918321-147918659:+
Coord C1 exon
chr1:147918321-147918385
Coord A exon
chr1:147918386-147918565
Coord C2 exon
chr1:147918566-147918659
Length
180 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
AACCGCGGGTCTCTTCACAGAGT
3' ss Score
7.88
Exon sequences
Seq C1 exon
CTGAAACATTAACAAATGTGCTGGATTTCAAAAGGGATGCCGGCCTGTGGCATGGAGTGTTAACA
Seq A exon
GTGAGTGCTGTGTCTATACTACCTAACTGTGGGGAGGTTGCCAACGTTTTACGCCCATGGGCAACACCAAGCCCCACTGTGGCTGGTGGAGTCAGCCCTTGTGCTGTGAGTAGAGCTCTGACACTCTCTGTGCCTCTCCTGGTGGGGCCCCCCACCCCACAACCGCGGGTCTCTTCACAG
Seq C2 exon
AGTATCTTGAAGAGGATACATGTGGTCAGCATCCCATATGCGCTGATGAAGGCGAACCCACTCTCCTGGATTCAGAAAGTGTGTGTGTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495:ENSBTAT00000061028:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAACATTAACAAATGTGCTGGA
R:
TACACACACACTTTCTGAATCCAGG
Band lengths:
154-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development