HsaINT0048079 @ hg38
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46537224-46537539:+
Coord C1 exon
chr21:46537224-46537288
Coord A exon
chr21:46537289-46537445
Coord C2 exon
chr21:46537446-46537539
Length
157 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GCATGTGTGCTCCCCCACAGAGC
3' ss Score
9.65
Exon sequences
Seq C1 exon
CTGAAACATTAACAAACGTGCTGGATTTCAAAAGGGATGCTGGTCTGTGGCATGGCGTGTTAACA
Seq A exon
GTGAGTGTTGTTTGCTGATGACTAACTGTTGGAACAAGGGATTGAGATGAACCCAAGCCTCTGCCTGAAATGTTGTTGGGAGAGTACATCGGTTTTGTTTTGCTTTTTCTGGTGTGGCTCGGGCCCACTCGCCCTAAGCATGTGTGCTCCCCCACAG
Seq C2 exon
AGCGTCATGAACAGGATGCACGTGGTCAGCGTCCCCTACGCGCTGATGAAGGCGAACCCACTCTCCTGGATCCAGAAAGTGTGCTTCTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305:ENST00000400274:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAACATTAACAAACGTGCTGGA
R:
TAGAAGCACACTTTCTGGATCCA
Band lengths:
154-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development