BtaINT0049280 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147943251-147945788:+
Coord C1 exon
chr1:147943251-147943378
Coord A exon
chr1:147943379-147945673
Coord C2 exon
chr1:147945674-147945788
Length
2295 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CGCTTCCCTTCCTCCCCCAGGAT
3' ss Score
12.15
Exon sequences
Seq C1 exon
GATGACCTGGTCTTCGTCGTGGGCAAGCTGGACGGGCTGATGGTGGTGGGATTTCGCAGACACAACGCGGATGACGTGGTGGCCACTGCGCTGGCCGTGGAGCCCATGAAGTTTGTCTACAGAGGCAG
Seq A exon
GTGATGCGCGGGTCCCCTTGCCTCACCTTTAGGTTCCTTCTCCGCTTAACCCTCAAGAGGTCCCCACATTGGAAGGAGAGCCCAGTGCTGTGAATACGCAAAACCTAATAATTCCTGTACATTGGAGAACTTCGCAAAGAACAGGACGATGTTTGCAGGAGGATGCCTGAGTCAGAGTCCTCACCATCTGCAGAGTTCACGATTTCTTGAGGGTGAGACCCAGACCAAGGCCTGGGCACGGAGACTGGGCCAGCACCACCCAGGAGCTGTGTGCCTGAGGGCAGAACCTCAGGGATGCAGGCCGGAATGGAGGCCTTTTCCTGAGAGTTACCAGGGGCCTTGCTTTCCTGAGATCAAGTCAGTTTACCTTTCCTGCATGTGTCAGGCAGGCACTTCACAGGTTCTCATCCAGAGAGCAGATAAGGGGGCCCAGCTGGTCGGGGCCCCAGACAGCTGGGATGGGGAGGAAGGGCCCTGTCTGGCCTGTCCAGCTCAGGGCTCTTTGTCCTAGGGGAGGGGTTCCATTCCTGGTTGGCCCACTCAGCCACCTATTTCATTTTATTCTTCTCATGGGAGTGCTTCTATTACTCAAACAAGGGTGCCTGTGAGCCTGGCCAGAGCCTTCCTGTGAATATGTTGTTATTCAGTCACTCAGTTGTGTCCATCTCTTTGTGACCACATGGGCTGCAGCACGCCAGGCTTCCCTGTCCTTCACTATTTCTAAGAGTTTGCTCAAACTCATGTCCATTATACCTTAAAGAAATCATCAGGGACTTCTGCCAGTGAGGGGTCAGCATGGCTGCCGGCCTTTGTCCAGGTTGGAGTGATGGCCATGGGTGACTGACCACCTGGGGGGAGCCAGCTGGGCAGGTGGAACTGGTGGGTATGTGCATCCTAGAGCTGGGGCACGGGGCACACACAGAAATTGGAGGCACTGTTAACATAGGTGTCCACGGAGGGGACACTGGGTAGCCCGCACGTGCTCCTGGTATGTCAGGGAGACTGCCTGGCGTGGCCAACGATACCTGATGATACCTGGAGGTGACGCTGGCCTGGTGGCTGACTGGGTTGTGGGGTGGATGCATCTGTGGCTGGAGAGGTGACCTCTCTGCCTTCACCATAGAGGAGCTGAGCCCTGGGCGGATACCTGCAGGAACTATTGCAATGTGAGGTCAAGGCACCACAACAGAGCAGTTTTTCAGTAGGTGGAATAAATGTGGGGCAGAGGCGGCCGGGGAGGGAGCTGATAAGCTGGAAAGCCAGAAGAAGAAACTGCTCCAAAAGTGAAGAAATAGAAAGTCTAAAAGAAAAATTGAGAGAAAAGTGAAGCGAGCTGGGGTCGCATGCAGACAGTAACCTCAGGGAGGGGAGGGGGTGCACATGTGAACCTGCGGCTGGAGGAGGCAGCCACGGGGCGGGTCTCCAGCCAGGATATGCCAGACGCCCCAGAAGAGGGCCTGGAGCGAGAGGATGACGTGCAGTGATGTTTAAGGTTTTCAGAGGAACTTTTAGCCTAGATTTTAATATATGCATCCCAAGATGTCACTTAATTGTGCGGTTGCAGTGAAAATGGTCTTGGGTATATAGGTTTCAGAAGTTTTATAACAAAGACTGTTTTCTTGAAAACGCTTTCAGGTAAGGTACTAAGAGAAATAAGATGGGTGAAAGTGAGGAAATGTTAATACTGGGTGAAGCGTGTATAAAAGAGAAAGAGTGTGTGGGTGTGTATGTGTGCATGTGGCACCTGTGTGCTCAGTGGCCAGAGGAATGGGTGAGCAGGTAGGTCCATGAGGCCCAGGGCTCACGTGGCAGACATGCCAGCTACCGGTCTTGTGAGGGAAAAGAATCTACTCGAGTCTAAAAGAAGAAAAAGGCAACACACAGAAAAGGTGAACATGTCGAATTCTTCAGTAAGACACGAAATACAAGTCCACAGACATCAGTCACAGACGTGAGCAGAGTCACGCACGGGGAGAGATTTCATCAGCTGCACTGAAAAATTATGTAATTAATGGATCTTCTGGATACACATTTTTACATGAAGACATCATCGCATGGCTTAACATTACAATTAAGGAGAAACTTCTTTAATAGTGTGAGCCTTGTTTTTTCTCTGCACCCAGATTCTGTCTGCTTTGTGAATGGAAACTCATTTTTCCACATTGGAGGAAGTTTGGTTCCTTTTATGTTCTGTGGACCACGTCTCCCTCCAGCCCCACCACAGTTTCCATCTCATGGGGTGGAGTATCCGTGCCCGATCGTGCCGGGTGGTCATCGCTTCCCTTCCTCCCCCAG
Seq C2 exon
GATTGCAGTGTTCTCCGTGACAGTGCTCCATGACGACCGGATTGTGCTGGTGGCAGAGCAGCGGCCTGACGCCTCCGAGGAGGACAGCTTCCAGTGGATGAGCCGCGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495:ENSBTAT00000061028:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development