GgaINT0051026 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6921650-6922879:-
Coord C1 exon
chr7:6922752-6922879
Coord A exon
chr7:6921765-6922751
Coord C2 exon
chr7:6921650-6921764
Length
987 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCCTGTCCTTTGCATTACAGGAT
3' ss Score
9.73
Exon sequences
Seq C1 exon
GACTATCTGGTGTTTGTGGTAGGAAAATTGGATGGCCTAATAACAGTTAGTGGTCGCAGACATAATGCAGATGATGTGGTAGCCACAGCACTGGCAGTAGAACCAATGAAATTTGTCTACCGGGGAAG
Seq A exon
GTGAGTATATTAAAAACTTCACAAGCACTGACTGAACAGTGTTACTTTTGTTCACCCTCAAACAATGATGAAGTAATGTAGTCTATATGGGAGCTCTGCTTGTTAATTTTTACACATGTACTGTGCAGGAAAAGTGACACGAGGTTGTAATATGCCAAATAAGAACTTGACAATCCCTGCTAATTTTAAGTGACTGTTTAAAACTTCTTTTAAAACTTCTCTTGAGAAAGTCAAATTAATCTTGACAGAGAATACAAAATACATCTTCCCTTTGTCCCCCTGAGCACTCTCATGCAGCATGGCCTAGGTAAGACCTTTGCAGCTTGTTCTAAAGAACCAAGTAAAAATGTTGAGACAGCTCAAGGACTTTGAAGGAGTGTGCATGCTGTATCAGTAGCCTGTCTGCTCTTCATTATGTTCAGGTATTTTTCTTCTGCAGCAGTGGTGACGATGTAGAACTGTTACTGACTGTTACAAAGTCAGGCTTTCTTTGTTTTTGCATTGCTAATTTAATTCATTTATCATAAAAATAATAGCAGTGCCTAGTAAAGACATGATTAATATTCTTTCCAAGAAGCTGCAGGCCTAAAACTAGTTCACAAAGGGGAATAAGCATTTTCAGTGCATATACTGCTAATTTAGCACAGTTGTTGTCTGTCCGGAGAAATAAAGTATGTAGAAGCAAAAAGTTCAGCATGCATGATGGAGTTAAATAGGCAAGATTTGCACAGAGCCTACATGTATGAAATCTGCCTGTGTTAAACACATTGGTGACTGCAGGTTCACTTAACCCTCCAGCATAAATATATGACAGAAATGGACCTGCATTTGTCCTGAATTTGTGATTTTGTGGTGATGTGGCATGAGTGATGATTGTATGTGTTGAAGCACTGCTACTGAAGAGTACAGTCATTTCCATGTTACAGTAAGCCATGCTATGTTCATTGTATGTTGCATCTCATCATTCTCCTGTCCTTTGCATTACAG
Seq C2 exon
GATAGCAGTTTTTTCTGTGACGGTTTTGCATGATGATCGAATAGTGCTTGTGGCAGAGCAGCGCCCTGATGCGTCAGAGGAGGACAGTTTTCAGTGGATGAGCAGGGTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATCTGGTGTTTGTGGTAGGA
R:
AGAACCCTGCTCATCCACTGA
Band lengths:
238-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]