BtaINT0049292 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147968269-147970245:+
Coord C1 exon
chr1:147968269-147968439
Coord A exon
chr1:147968440-147970183
Coord C2 exon
chr1:147970184-147970245
Length
1744 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTCCTCTGCTCCCCTTGCAGGGC
3' ss Score
12.18
Exon sequences
Seq C1 exon
ATGAAGGGCGTGAACCTGTCGTGTGTGCGCACCTGCATGGTGGTGGCTGAGGAGCGGCCCAGAATCGCGCTCACACAGTCCTTCTCCAAGCTGTTCAGAGACCTGGGCCTGCCCGCGCGCGCCGTGAGCACCACGTTCGGCTGCAGGGTCAATGTGGCCATCTGCCTCCAG
Seq A exon
GTAAGGCCGCGGGGCTTCCTCAGGGCGCCTGTGCACGCCCTGCACCGCCCCGTCCCTTGGTCCCTTCTGGCCTCCAGCCTTTTGATTTTCCAAGTATGGCTTTGAGAACTGAGCATTTTTGTTTAAAAGAGATTCTGTTCTTGATGAACAAAGGCTTATTTGGAAAAAGCACCAGTTGTTTTTGAACAGTGACAATTACTGAGAGGAATTGATAAGCTGGACACAGTATGTAGCTAATATTCCAAAGCAAGATTGAGTTTATTGTTTTGTGAGACATCTGGCAATTTTAAATGGAAACATTAATGAGTGTGATCATTTATATTGCCCTAAACTCATTCTTGAAACACTGAGGTATTTTACTTTTTAAAAGGAAACAAAGTTTCAGAACAGCTCACTGTAGCAGTGTTCTGCTTCTTCAGGGGGCTGGGGCTCTTTTCCAGGTTTCTGGCTGGTATCTCAATCCCACTTCTTTCTAAAATGCATTGCATGCACCTGCTCCTACATTCAGGGTTGTTGGGAGGAAAGGCCTCAGGAGAACCACAGTCCCTCGTCCCCCAGCCCCGGTCCTGACCAATGCCCGCCGGGTGCAGGGCGTGTCTGGACTGGGGAGATCAGCATCCTGTTGTCCAGGTGTTCCTGTGACATCCTCTCCACAGTATAGATGCTGACCGTCCAGGTCTCGCTTGGACCCTTACTGCATAGCAGGAGGAGGTGGAGGGGTCCCTCGGGAGATCCCTTCTGATGTCGATGGTGCGACTGCACCTCGACTGGTGGCGTGGGGTTGGTGGCTGTATGCGCGGCCCTTCTGTCCGCTCAGCGTCTGGGAGCCGGCTCCTCCTTCCTGGAAACGTCAGCAGGAGCCTGGCTATTGCTCTGTGCGCTTCGATGCAGTGATGCCTTTTGCTCTCTCTCAGCTCCTTCCTCACGTGCCTATGCTCTCTGTTTGTGTTTCCTGTGGCGTCTCTTCCCTGTCTCGCTCTGCTGGCCTCCTTTGTGTCTGTCAGCCCAACAGGCTGGGAAAGCTGGCTGAGCAGGTATGACCTTGACCTTGACCTCGAGGTGCCTCTGTGCTTCTGTGAGTTCATGTGGCCTCTCGTGGTCTTGCTCCTTTGTAAAAACGAGCTTAAAAGCAGAGTATTTTCAGAAGTATTTAGCATTCACAGTCTGCTGCCTCTGGAGGAAGAGCCGTCTTCATTCCAGGGCAGACGTTGGTGACATTGTCTGGGATCGCCAGAGAATGGTGTTGGGGCGGAGTGTCTGTGTACTTTGATGTTCAGTGTCTAACAGAAGGGACGTGCTGTCCTCTGTCAGGGCCAACGTCAGGTGTCAAGTGAGAGCAATGGAGTGGGAACATCACTGAACGTCCTGCTGAGGCCTCGCCCCTGAAGGAGCCACGCTGTGCTCAGCCCTTAAGAGAATTAGGTCTGAGCAAGCACAGCTCAGGGAAATGCCCCCAAACCCATGGTGGTGTTTTCTCAGGGACCAGTGGGAATCGAAGCTGTCAGGACTGAAATGTGAGATTGTTTGCCTTGATCTCTCCCTTCAGTGCTAGGGGAGGCTTCCCGCCATGTCAGCAAGTCTTGTAGGTGTTTGGAGGAAGGCAGACACCTGCTGGGGGCAGAGCAGTTGCCTTCCCGCCCCCGCCCCGCCCCCTGGCTGGGAGGAGCTGTGCCTGTGTGCATGCCACACCCCTGGAAACGATGGGCGTGAGGTTTGAGCGGACGTTCCTCTGCTCCCCTTGCAG
Seq C2 exon
GGCACGGCCGGCCCAGACCCCACAACTGTCTATGTGGACATGAGGGCACTGCGCCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495:ENSBTAT00000061028:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGGCGTGAACCTGTC
R:
CAGTGCCCTCATGTCCACATA
Band lengths:
222-1966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development